Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   CGC32_RS07180 Genome accession   NZ_CP022409
Coordinates   1447708..1449021 (-) Length   437 a.a.
NCBI ID   WP_198360891.1    Uniprot ID   -
Organism   Helicobacter pylori strain G272     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1442708..1454021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGC32_RS07150 (CGC32_07155) nadC 1443177..1443998 (-) 822 WP_089482998.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CGC32_RS07155 (CGC32_07160) nadA 1443998..1445002 (-) 1005 WP_089482999.1 quinolinate synthase NadA -
  CGC32_RS07160 (CGC32_07165) - 1444992..1445795 (-) 804 WP_089483000.1 phosphatidylserine decarboxylase -
  CGC32_RS07165 (CGC32_07170) - 1445789..1446295 (-) 507 WP_000953090.1 DUF6115 domain-containing protein -
  CGC32_RS07170 (CGC32_07175) - 1446308..1446802 (-) 495 WP_001864654.1 hypothetical protein -
  CGC32_RS07175 (CGC32_07180) mqnP 1446795..1447679 (-) 885 WP_089483002.1 menaquinone biosynthesis prenyltransferase MqnP -
  CGC32_RS07180 (CGC32_07185) comEC/comE3 1447708..1449021 (-) 1314 WP_198360891.1 ComEC/Rec2 family competence protein Machinery gene
  CGC32_RS07185 (CGC32_07190) - 1449018..1450484 (-) 1467 WP_089483003.1 replicative DNA helicase -
  CGC32_RS07190 (CGC32_07195) - 1450495..1451889 (-) 1395 WP_089483004.1 NAD(P)H-hydrate dehydratase -
  CGC32_RS07195 (CGC32_07200) crdS 1451892..1453094 (-) 1203 WP_089483005.1 copper-sensing histidine kinase CrdS -
  CGC32_RS07200 (CGC32_07205) crdR 1453060..1453701 (-) 642 WP_089483006.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50292.19 Da        Isoelectric Point: 9.8515

>NTDB_id=239215 CGC32_RS07180 WP_198360891.1 1447708..1449021(-) (comEC/comE3) [Helicobacter pylori strain G272]
MKDKTFQGAFELLTTPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKFKFCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIALLPKLLFSVGFLLSICGVWYIFLFLKHTQNFFKTSSFLARSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDPILNMPLTIPTISVSSPLWLLGTHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=239215 CGC32_RS07180 WP_198360891.1 1447708..1449021(-) (comEC/comE3) [Helicobacter pylori strain G272]
TTGAAAGACAAAACTTTTCAGGGGGCATTTGAACTTCTTACGACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCGATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAGTTCAAATTTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCGCTCATTCCAACGCTTTAGTGGGTAATTTGTATCGAGCGCTTTTTATAGGGGATAGCTTG
AATAAGGATTTAAGAGACAGGGCTAATGCACTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGTGTGTATTTTCTTTTCTCTCTTTTTTATACTCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTATTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAAATTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGT
GCGCTAGTGTTTTTGAACATGCTCATTATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGATTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCGGTGGGCTTGGGGTCTTTGCTAGATCCCA
TTTTAAACATGCCTTTAACAATCCCCACGATTTCGGTTTCTTCACCCTTATGGCTTTTAGGAACGCATTTATTTTTAACG
ATTTTAAGCACGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952

Multiple sequence alignment