Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   CGC32_RS00010 Genome accession   NZ_CP022409
Coordinates   1589..3022 (+) Length   477 a.a.
NCBI ID   WP_089482114.1    Uniprot ID   -
Organism   Helicobacter pylori strain G272     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGC32_RS00005 (CGC32_00005) dnaA 1..1368 (+) 1368 WP_089482113.1 chromosomal replication initiator protein DnaA -
  CGC32_RS00010 (CGC32_00010) comH 1589..3022 (+) 1434 WP_089482114.1 competence protein Machinery gene
  CGC32_RS00020 (CGC32_00020) - 3200..3952 (+) 753 WP_089482115.1 exodeoxyribonuclease III -
  CGC32_RS00025 (CGC32_00025) - 3949..4584 (-) 636 WP_057112702.1 outer membrane protein -
  CGC32_RS00030 (CGC32_00030) - 4588..4941 (-) 354 WP_089482116.1 hypothetical protein -
  CGC32_RS00035 (CGC32_00035) recG 5023..6888 (+) 1866 WP_089482117.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54644.53 Da        Isoelectric Point: 7.2023

>NTDB_id=239200 CGC32_RS00010 WP_089482114.1 1589..3022(+) (comH) [Helicobacter pylori strain G272]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHQMPSLNAPIQKPQNKPTSSQQSLQNFPYTESKLGSKNPKNSLLQPLAT
PNKISSANEVKTPTNDTKPPLKHSSEDQENNLFVTPPTEKTLPNNTPNANINEHNESNENRDSVEKQAIRDPNVKEFACG
KWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKATYERPKQDDQVEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=239200 CGC32_RS00010 WP_089482114.1 1589..3022(+) (comH) [Helicobacter pylori strain G272]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCACATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCATATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCTTCAAAACTTTCCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACTCCTAACGCTAATATTAATGAAC
ACAATGAAAGCAATGAAAATAGGGATAGTGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGCAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGACTAGACAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATCAAGTAG
AGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.484

100

0.929

Multiple sequence alignment