Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CGQ41_RS05680 Genome accession   NZ_CP022403
Coordinates   1238158..1239111 (+) Length   317 a.a.
NCBI ID   WP_025773893.1    Uniprot ID   -
Organism   Clostridium botulinum strain AM922     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1233158..1244111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGQ41_RS05655 (CGQ41_05760) - 1233279..1233515 (+) 237 WP_003356614.1 SHOCT domain-containing protein -
  CGQ41_RS05660 (CGQ41_05765) - 1233785..1234486 (+) 702 WP_012704055.1 response regulator transcription factor -
  CGQ41_RS05665 (CGQ41_05770) - 1234486..1235892 (+) 1407 WP_021136620.1 HAMP domain-containing sensor histidine kinase -
  CGQ41_RS05670 (CGQ41_05775) - 1236232..1236918 (-) 687 WP_014520255.1 DNA alkylation repair protein -
  CGQ41_RS05675 (CGQ41_05780) - 1237154..1237912 (-) 759 WP_003388491.1 AraC family transcriptional regulator -
  CGQ41_RS05680 (CGQ41_05785) ceuB 1238158..1239111 (+) 954 WP_025773893.1 ABC transporter permease Machinery gene
  CGQ41_RS05685 (CGQ41_05790) - 1239101..1240051 (+) 951 WP_003357016.1 iron chelate uptake ABC transporter family permease subunit -
  CGQ41_RS05690 (CGQ41_05795) - 1240048..1240803 (+) 756 WP_011948720.1 ABC transporter ATP-binding protein -
  CGQ41_RS05695 (CGQ41_05800) - 1240877..1241821 (+) 945 WP_075143682.1 siderophore ABC transporter substrate-binding protein -
  CGQ41_RS05700 (CGQ41_05810) - 1242024..1243025 (+) 1002 WP_164071451.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34889.26 Da        Isoelectric Point: 9.9543

>NTDB_id=239136 CGQ41_RS05680 WP_025773893.1 1238158..1239111(+) (ceuB) [Clostridium botulinum strain AM922]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATITEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYDLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=239136 CGQ41_RS05680 WP_025773893.1 1238158..1239111(+) (ceuB) [Clostridium botulinum strain AM922]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATTAGTAGAATCCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTATTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATGATCTTATT
CAAAGTATTGCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAACAAATTCACAGTAGCAGGTATGGGAGAGGATTTTTCTAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGTTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGAGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment