Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   C9J81_RS09950 Genome accession   NZ_CP028187
Coordinates   1872280..1872660 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain CFSAN054106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1867280..1877660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J81_RS09925 (C9J81_09930) aspS 1867793..1869544 (+) 1752 WP_002781656.1 aspartate--tRNA ligase -
  C9J81_RS09930 (C9J81_09935) - 1869541..1870116 (+) 576 WP_002781658.1 adenylate kinase -
  C9J81_RS09935 (C9J81_09940) ppa 1870126..1870644 (+) 519 WP_002776378.1 inorganic diphosphatase -
  C9J81_RS09940 (C9J81_09945) msrA 1870692..1871192 (+) 501 WP_002793323.1 peptide-methionine (S)-S-oxide reductase MsrA -
  C9J81_RS09945 (C9J81_09950) - 1871415..1872269 (-) 855 WP_374188682.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  C9J81_RS09950 (C9J81_09955) dprB 1872280..1872660 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  C9J81_RS09955 (C9J81_09960) dprA 1872657..1873427 (-) 771 WP_002818781.1 DNA-processing protein DprA Machinery gene
  C9J81_RS09960 (C9J81_09965) - 1873417..1874469 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  C9J81_RS09965 (C9J81_09970) ilvC 1874472..1875494 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  C9J81_RS09970 (C9J81_09975) - 1875617..1877551 (+) 1935 WP_107128221.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=239119 C9J81_RS09950 WP_002776373.1 1872280..1872660(-) (dprB) [Campylobacter coli strain CFSAN054106]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=239119 C9J81_RS09950 WP_002776373.1 1872280..1872660(-) (dprB) [Campylobacter coli strain CFSAN054106]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421