Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C9J81_RS07555 Genome accession   NZ_CP028187
Coordinates   1417143..1417691 (-) Length   182 a.a.
NCBI ID   WP_107128133.1    Uniprot ID   -
Organism   Campylobacter coli strain CFSAN054106     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1412143..1422691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J81_RS07525 (C9J81_07530) ctsT 1412186..1412491 (-) 306 WP_002783353.1 hypothetical protein Machinery gene
  C9J81_RS07530 (C9J81_07535) proC 1412488..1413225 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  C9J81_RS07535 (C9J81_07540) fliW 1413225..1413614 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  C9J81_RS07540 (C9J81_07545) - 1413778..1414425 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  C9J81_RS07545 (C9J81_07550) lon 1414441..1416816 (+) 2376 WP_002783351.1 endopeptidase La -
  C9J81_RS07550 (C9J81_07555) rpsR 1416872..1417132 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  C9J81_RS07555 (C9J81_07560) ssb 1417143..1417691 (-) 549 WP_107128133.1 single-stranded DNA-binding protein Machinery gene
  C9J81_RS07560 (C9J81_07565) rpsF 1417700..1418077 (-) 378 WP_002812868.1 30S ribosomal protein S6 -
  C9J81_RS07565 (C9J81_07570) - 1418164..1419030 (-) 867 WP_002812869.1 VirK family antimicrobial peptide resistance protein -
  C9J81_RS07570 (C9J81_07575) rseP 1419023..1420129 (-) 1107 WP_107128134.1 RIP metalloprotease RseP -
  C9J81_RS07575 (C9J81_07580) pgsA 1420126..1420662 (-) 537 WP_002777068.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C9J81_RS07580 (C9J81_07585) - 1420813..1421418 (-) 606 WP_002777066.1 NAD(P)H-dependent oxidoreductase -
  C9J81_RS07585 (C9J81_07590) - 1421418..1422038 (-) 621 WP_002780262.1 NAD(P)H-dependent oxidoreductase -
  C9J81_RS07590 (C9J81_07595) - 1422103..1422527 (-) 425 Protein_1483 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20665.57 Da        Isoelectric Point: 4.8501

>NTDB_id=239112 C9J81_RS07555 WP_107128133.1 1417143..1417691(-) (ssb) [Campylobacter coli strain CFSAN054106]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=239112 C9J81_RS07555 WP_107128133.1 1417143..1417691(-) (ssb) [Campylobacter coli strain CFSAN054106]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GCTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

36.413

100

0.368

Multiple sequence alignment