Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C9J81_RS06940 Genome accession   NZ_CP028187
Coordinates   1295682..1296176 (-) Length   164 a.a.
NCBI ID   WP_002786475.1    Uniprot ID   -
Organism   Campylobacter coli strain CFSAN054106     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290682..1301176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J81_RS06920 (C9J81_06925) metE 1291303..1293567 (-) 2265 WP_002845672.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  C9J81_RS06925 (C9J81_06930) - 1293590..1294360 (-) 771 WP_002845675.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  C9J81_RS06930 (C9J81_06935) - 1294374..1295366 (-) 993 WP_002807373.1 isopenicillin N synthase family oxygenase -
  C9J81_RS06940 (C9J81_06945) luxS 1295682..1296176 (-) 495 WP_002786475.1 S-ribosylhomocysteine lyase Regulator
  C9J81_RS06945 (C9J81_06950) gatB 1296291..1297709 (+) 1419 WP_002786474.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  C9J81_RS06950 (C9J81_06955) - 1297709..1298608 (+) 900 WP_002777349.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  C9J81_RS06955 (C9J81_06960) - 1298617..1299798 (+) 1182 WP_107128108.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.19 Da        Isoelectric Point: 5.0135

>NTDB_id=239106 C9J81_RS06940 WP_002786475.1 1295682..1296176(-) (luxS) [Campylobacter coli strain CFSAN054106]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEASMKDILNVSDQSQIPELNIYQCGTCAMHSLDEAKEIAQKVLNSTIGIMNNEELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=239106 C9J81_RS06940 WP_002786475.1 1295682..1296176(-) (luxS) [Campylobacter coli strain CFSAN054106]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCGCCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCACACCTGATGAAAAAAGTGTTGCTAAAGCTTGGGAAGCCTC
AATGAAAGATATTTTAAATGTGAGCGATCAAAGTCAAATTCCTGAACTCAATATCTATCAATGTGGAACTTGTGCTATGC
ATTCTTTGGATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTACCATAGGCATAATGAACAACGAAGAATTAAAA
CTTGAAAATATCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

71.429

98.171

0.701