Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   C9J81_RS05505 Genome accession   NZ_CP028187
Coordinates   1009068..1009664 (+) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain CFSAN054106     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1004068..1014664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J81_RS05490 (C9J81_05495) ctsR 1006775..1007086 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  C9J81_RS05495 (C9J81_05500) ctsD 1007064..1008482 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  C9J81_RS05500 (C9J81_05505) ctsP 1008475..1009071 (+) 597 WP_107128045.1 ATP-binding protein Machinery gene
  C9J81_RS05505 (C9J81_05510) ctsX 1009068..1009664 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  C9J81_RS05510 (C9J81_05515) ctsE 1009657..1011219 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  C9J81_RS05515 (C9J81_05520) ctsF 1011206..1012381 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  C9J81_RS05520 (C9J81_05525) - 1012378..1013142 (-) 765 WP_002781157.1 TSUP family transporter -
  C9J81_RS05525 (C9J81_05530) - 1013145..1013909 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=239092 C9J81_RS05505 WP_002779313.1 1009068..1009664(+) (ctsX) [Campylobacter coli strain CFSAN054106]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=239092 C9J81_RS05505 WP_002779313.1 1009068..1009664(+) (ctsX) [Campylobacter coli strain CFSAN054106]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434

Multiple sequence alignment