Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C9J79_RS08980 Genome accession   NZ_CP028185
Coordinates   1721294..1721788 (+) Length   164 a.a.
NCBI ID   WP_032583788.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CFSAN054107     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1716294..1726788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J79_RS08965 (C9J79_08960) - 1717680..1718858 (-) 1179 WP_002859276.1 metal-dependent hydrolase -
  C9J79_RS08970 (C9J79_08965) gpsA 1718868..1719764 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  C9J79_RS08975 (C9J79_08970) gatB 1719761..1721179 (-) 1419 WP_002869634.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  C9J79_RS08980 (C9J79_08975) luxS 1721294..1721788 (+) 495 WP_032583788.1 S-ribosylhomocysteine lyase Regulator
  C9J79_RS08985 (C9J79_08980) - 1722099..1723091 (+) 993 WP_070318252.1 isopenicillin N synthase family oxygenase -
  C9J79_RS08990 (C9J79_08985) - 1723102..1723872 (+) 771 WP_002855781.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  C9J79_RS08995 (C9J79_08990) metE 1723884..1726148 (+) 2265 WP_044277889.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18227.21 Da        Isoelectric Point: 6.6314

>NTDB_id=239068 C9J79_RS08980 WP_032583788.1 1721294..1721788(+) (luxS) [Campylobacter jejuni strain CFSAN054107]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=239068 C9J79_RS08980 WP_032583788.1 1721294..1721788(+) (luxS) [Campylobacter jejuni strain CFSAN054107]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGCAGC
CATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGTGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707