Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C6668_RS06935 Genome accession   NZ_CP028166
Coordinates   1259488..1260915 (+) Length   475 a.a.
NCBI ID   WP_000980581.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN064036     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1254488..1265915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6668_RS06905 (C6668_06900) - 1255049..1255408 (-) 360 WP_032160190.1 hypothetical protein -
  C6668_RS06910 (C6668_06905) - 1255387..1255683 (+) 297 Protein_1284 EutP/PduV family microcompartment system protein -
  C6668_RS06915 (C6668_06910) tmaR 1255784..1256113 (-) 330 WP_000450409.1 DUF496 family protein -
  C6668_RS06920 (C6668_06915) yeeA 1256285..1257343 (-) 1059 WP_001200891.1 FUSC family protein -
  C6668_RS06925 (C6668_06920) sbmC 1257542..1258015 (-) 474 WP_107147909.1 DNA gyrase inhibitor SbmC -
  C6668_RS06930 (C6668_06925) dacD 1258133..1259299 (-) 1167 WP_032176408.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C6668_RS06935 (C6668_06930) sbcB 1259488..1260915 (+) 1428 WP_000980581.1 exodeoxyribonuclease I Machinery gene
  C6668_RS06940 (C6668_06935) tsuB 1260958..1261185 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C6668_RS06945 (C6668_06940) tsuA 1261199..1262257 (-) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  C6668_RS06950 (C6668_06945) plaP 1262436..1263794 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C6668_RS06955 (C6668_06950) yoeI 1263784..1263846 (-) 63 WP_010723108.1 membrane protein YoeI -
  C6668_RS06960 (C6668_06955) yeeY 1264061..1264990 (-) 930 WP_032176419.1 LysR substrate-binding domain-containing protein -
  C6668_RS06965 (C6668_06960) yeeZ 1265036..1265860 (-) 825 WP_107147910.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6070

>NTDB_id=238959 C6668_RS06935 WP_000980581.1 1259488..1260915(+) (sbcB) [Escherichia coli strain CFSAN064036]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=238959 C6668_RS06935 WP_000980581.1 1259488..1260915(+) (sbcB) [Escherichia coli strain CFSAN064036]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579