Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C9J78_RS04790 Genome accession   NZ_CP028165
Coordinates   915656..916126 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain CFSAN064037     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 910656..921126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J78_RS04770 (C9J78_04775) coaW 910965..911768 (+) 804 WP_000862733.1 type II pantothenate kinase -
  C9J78_RS04775 (C9J78_04780) - 911898..912569 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  C9J78_RS04780 (C9J78_04785) - 912968..914161 (-) 1194 WP_000183710.1 hypothetical protein -
  C9J78_RS04785 (C9J78_04790) - 914161..915345 (-) 1185 WP_103145524.1 M20 family metallopeptidase -
  C9J78_RS04790 (C9J78_04795) luxS 915656..916126 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  C9J78_RS04795 (C9J78_04800) - 916279..916629 (-) 351 WP_001024035.1 membrane protein -
  C9J78_RS04800 (C9J78_04805) - 916643..917944 (-) 1302 WP_001242312.1 pyrimidine-nucleoside phosphorylase -
  C9J78_RS04810 (C9J78_04815) deoC 918224..918886 (-) 663 WP_001083338.1 deoxyribose-phosphate aldolase -
  C9J78_RS04815 (C9J78_04820) deoD 919200..919910 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  C9J78_RS04820 (C9J78_04825) - 920031..920474 (-) 444 WP_000070865.1 Dps family protein -
  C9J78_RS04825 (C9J78_04830) - 920675..921088 (-) 414 WP_001123307.1 DUF393 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=238899 C9J78_RS04790 WP_000164421.1 915656..916126(+) (luxS) [Staphylococcus aureus strain CFSAN064037]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=238899 C9J78_RS04790 WP_000164421.1 915656..916126(+) (luxS) [Staphylococcus aureus strain CFSAN064037]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATATGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCTG
GATTGCATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404