Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   C8257_RS30925 Genome accession   NZ_CP028162
Coordinates   6425720..6426244 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain MRSN12280     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6420720..6431244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8257_RS30910 (C8257_30905) aroB 6421836..6422942 (-) 1107 WP_003095831.1 3-dehydroquinate synthase -
  C8257_RS30915 (C8257_30910) aroK 6422992..6423510 (-) 519 WP_003095833.1 shikimate kinase AroK -
  C8257_RS30920 (C8257_30915) pilQ 6423522..6425666 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  C8257_RS30925 (C8257_30920) comL/pilP 6425720..6426244 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  C8257_RS30930 (C8257_30925) pilO 6426241..6426864 (-) 624 WP_003095838.1 type 4a pilus biogenesis protein PilO Machinery gene
  C8257_RS30935 (C8257_30930) pilN 6426861..6427457 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  C8257_RS30940 (C8257_30935) pilM 6427457..6428521 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  C8257_RS30945 (C8257_30940) - 6428706..6431177 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=238746 C8257_RS30925 WP_003095836.1 6425720..6426244(-) (comL/pilP) [Pseudomonas aeruginosa strain MRSN12280]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=238746 C8257_RS30925 WP_003095836.1 6425720..6426244(-) (comL/pilP) [Pseudomonas aeruginosa strain MRSN12280]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment