Detailed information NTG0023871

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: PBPR_RS02685
• Genome accession: NC_006370
• Coordinates: 556781..560176 (-)
• Length: 1131 a.a.
• NCBI ID: WP_011217302.1
• Uniprot ID: Q6LUS6
• Organism: Photobacterium profundum SS9
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 551781..565176

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PBPR_RS02670 (PBPRA0523)	-	552189..553217 (-)	1029	WP_011217299.1	ABC transporter permease	-
PBPR_RS02675 (PBPRA0524)	-	553220..554206 (-)	987	WP_011217300.1	ABC transporter permease	-
PBPR_RS02680 (PBPRA0525)	-	554348..556027 (-)	1680	WP_011217301.1	ABC transporter substrate-binding protein	-
PBPR_RS02685 (PBPRA0526)	chiS	556781..560176 (-)	3396	WP_011217302.1	response regulator	Regulator
PBPR_RS02690 (PBPRA0527)	rsmC	560502..561521 (-)	1020	WP_011217303.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
PBPR_RS02695 (PBPRA0528)	-	561645..562730 (-)	1086	WP_011217304.1	AI-2E family transporter	-
PBPR_RS02700 (PBPRA0529)	hemL	563052..564350 (-)	1299	WP_011217305.1	glutamate-1-semialdehyde 2,1-aminomutase	-

Sequence

Protein

• Length: 1131 a.a.
• Molecular weight: 127598.19 Da
• Isoelectric Point: 6.3794

>NTDB_id=23871 PBPR_RS02685 WP_011217302.1 556781..560176(-) (chiS) [Photobacterium profundum SS9]
MQNTKRFKRLQHTLMLAFLVLSITPLTLSAFFFLNSHTKDLAEQSTNHLASLLDNKQKQLNNFFTARELDAQSFARSELS
NASGGRFYGLVGAFNQLGEIDTLLKGTTNSRYFKETLTTKNKNFSSDNSASFVGHERYRLMYKRYNRAYEEYLKRSAFSD
IMLVDINGNVVYSVFQHNKFGSNLLDDNNPTLALKETFTKIQAKTKKHQLEPDVVPVVFTDFSLDPFSKEYTAWFAAPII
QQGYLHSYVFFKLKNKTISDLIKNANLSTNFVQTLLIGPDHKSRITDGKNAPATLTSQKIDAALAGESGVGSFNNYNNVS
VLSAFSQINVMGTTWALLVELPEKEAFARIHQLEKLFFFAMLTAIVLVFISSHWLSNSITAPLLRLTWAAERASAGDLEQ
EIKGTERSDEIGRLAISFARMQRSIREKITLIRDQNNELEQNLKVISQQNENLQAADKLKDEFLATTSHELRTPLHGMVG
IAESLLAGANGPVQKSQRRQLEMIINSGQRLTNLVDDLLDYHKMRYGDLDINKHAVNLPSAVRLVLELSSHLLGSKPVRI
INQIPNDLPLVLADEQRLEQILYNLVGNAIKYTSEGKIILSSTVLENQIRIQVVDTGQGIPAEQLEHIFEPLIQANTGLA
NYRQGAGLGLSISRQLIDLMGGHLYVSSQPMVGTTFSFTLNLASNEDIVASQQSTNGQIHFQAPSSETTTCETENLPENP
DGELLLVVDDEPVNLQVLNNFLRLEGYRVLTADSGPQALKIIEQQQPALILLDIMMPEMSGYEVCHILREEYSLIELPII
MLSALGQVQDRIKGFESGANDYLTKPFNKEELIARISAHLQAGKTEVQRQKNAALQQEIHRREQVEVGLLTTQSRLLGLL
ESTNEAILCVQNEGRIRYANSAAGKLFKRSPEQLERYNIEDILVTHLPNDISQSHHFNGNLTFRIGGELKPLETDVINLP
EESGLKRMFVFDNEGPSAQHRISMLEDAIDVLSRFAFDGDKHNLQQLRELGGEFTRLADKLGDNGKNKADMVRELLVEVM
KATLKYWETASQKTKFELAEESGLWRVYLDRSTLQTRTLDKYLHVETLPKTPRWRTVINTIDFVLERCTDSSLERHEVQT
MRDKLQHIISQ

Nucleotide

• Length: 3396 bp

>NTDB_id=23871 PBPR_RS02685 WP_011217302.1 556781..560176(-) (chiS) [Photobacterium profundum SS9]
ATGCAGAATACCAAACGATTTAAACGTCTCCAGCATACTTTAATGTTGGCTTTTTTAGTGCTTAGTATTACCCCACTAAC
ACTCTCGGCATTCTTTTTTCTCAATTCTCACACTAAAGATCTTGCTGAACAAAGCACTAATCATCTCGCATCCTTACTCG
ATAATAAGCAAAAGCAGCTCAATAACTTTTTTACCGCCAGAGAGTTGGATGCACAAAGCTTCGCACGTTCTGAACTGTCA
AATGCCAGTGGCGGGCGATTCTATGGCTTAGTCGGCGCTTTCAATCAATTGGGAGAAATTGACACCTTATTAAAAGGTAC
AACCAACAGCCGTTACTTCAAAGAAACGCTGACAACAAAAAATAAAAACTTTTCTAGCGACAATTCAGCAAGTTTCGTTG
GTCACGAACGTTATCGTCTAATGTATAAACGCTATAACCGAGCTTATGAAGAATACCTAAAACGATCGGCTTTTAGTGAC
ATTATGTTGGTCGATATAAACGGCAATGTGGTGTATTCCGTTTTTCAGCATAATAAATTTGGTTCCAATTTACTGGACGA
TAACAACCCTACTCTCGCATTAAAAGAAACCTTTACCAAGATCCAAGCCAAAACAAAGAAGCACCAATTGGAGCCCGATG
TCGTCCCTGTCGTGTTCACTGATTTCAGCCTCGATCCCTTTAGCAAAGAATATACGGCTTGGTTTGCAGCCCCTATCATT
CAACAAGGTTATTTACATAGTTACGTATTTTTTAAGCTAAAGAATAAAACGATCAGTGACTTAATTAAGAATGCGAACTT
AAGCACAAATTTCGTTCAAACGTTACTTATTGGTCCCGATCATAAATCACGTATCACTGATGGGAAAAACGCTCCAGCCA
CTTTAACAAGCCAAAAAATTGATGCTGCACTAGCAGGAGAAAGTGGTGTAGGTAGTTTTAACAATTACAACAATGTCTCT
GTTCTCAGTGCCTTCTCGCAGATCAATGTTATGGGAACCACCTGGGCCCTGTTGGTTGAATTACCCGAAAAAGAAGCCTT
TGCACGTATCCATCAACTAGAAAAGCTTTTCTTCTTTGCCATGTTAACAGCCATTGTGTTGGTATTTATCTCTTCTCACT
GGTTATCAAACTCTATTACCGCCCCACTTCTACGCTTAACATGGGCAGCAGAACGCGCCTCTGCTGGCGATTTAGAACAA
GAAATAAAAGGCACAGAGCGCAGCGATGAAATCGGGCGATTAGCAATCAGTTTCGCTCGAATGCAACGCTCAATCAGAGA
GAAGATCACACTCATTCGAGACCAAAATAACGAGCTAGAACAAAATTTAAAGGTCATTAGCCAGCAAAATGAAAACCTTC
AAGCAGCTGATAAATTAAAGGATGAATTCCTAGCAACCACGTCACATGAGTTACGCACCCCACTGCACGGTATGGTCGGC
ATTGCTGAATCACTTTTAGCGGGGGCAAATGGCCCGGTTCAAAAATCACAACGTCGCCAATTAGAGATGATCATCAATAG
CGGTCAACGTTTAACGAATCTCGTCGATGATCTGCTTGATTACCATAAAATGCGCTACGGTGATCTCGATATTAATAAGC
ACGCTGTAAACCTACCCTCCGCAGTACGCTTGGTACTCGAATTATCCAGTCACCTGCTGGGGAGTAAGCCTGTTCGCATT
ATCAATCAAATACCTAATGACTTACCGTTAGTATTAGCTGATGAACAGCGCCTTGAACAAATTCTTTATAATCTTGTTGG
TAACGCGATTAAATATACCTCTGAAGGGAAGATCATCCTCTCTTCCACCGTATTAGAAAACCAAATACGCATTCAAGTTG
TCGATACTGGGCAAGGCATTCCAGCTGAACAATTGGAACATATTTTTGAGCCGTTAATACAAGCAAACACTGGTTTGGCC
AACTACCGTCAGGGCGCTGGGCTGGGGTTATCGATTAGTCGTCAGTTAATCGATTTAATGGGAGGCCACCTTTATGTCAG
CAGCCAACCAATGGTCGGAACAACATTTAGCTTTACCCTTAATTTAGCGTCAAATGAAGACATTGTAGCTAGCCAACAGA
GCACCAATGGTCAAATCCACTTTCAAGCACCATCATCAGAAACCACTACATGTGAAACCGAAAATTTGCCTGAAAATCCT
GACGGTGAATTACTATTGGTCGTTGATGATGAACCCGTCAATTTGCAAGTCTTGAATAACTTCTTACGTTTAGAAGGTTA
TCGTGTTCTAACCGCAGACAGTGGCCCACAAGCACTCAAGATCATTGAACAACAACAGCCTGCCTTAATCCTGCTCGATA
TTATGATGCCTGAAATGAGTGGCTATGAGGTATGCCATATTTTACGCGAAGAATACTCCTTAATAGAGCTCCCGATCATA
ATGCTCTCAGCACTAGGGCAAGTTCAAGACAGAATCAAAGGCTTTGAATCGGGTGCTAATGATTATCTGACGAAACCATT
CAATAAAGAAGAATTGATCGCCCGTATTAGTGCCCACCTTCAGGCTGGAAAAACAGAAGTACAGCGTCAGAAAAATGCAG
CACTTCAACAAGAAATTCATCGCAGAGAACAAGTTGAAGTCGGTTTATTGACCACCCAAAGTCGTTTGCTTGGGTTACTA
GAATCAACCAATGAAGCCATCCTTTGTGTACAAAATGAAGGGCGTATTCGCTATGCCAATAGTGCGGCAGGGAAGCTATT
CAAACGCTCACCAGAACAGCTAGAACGCTATAACATTGAAGATATTCTAGTGACTCACTTACCTAATGATATTAGCCAAA
GTCATCATTTCAATGGCAACTTAACATTCCGTATTGGTGGTGAATTGAAGCCACTAGAGACTGATGTGATCAATTTACCT
GAAGAATCAGGGCTAAAACGAATGTTTGTATTTGATAATGAAGGTCCATCTGCTCAGCATCGAATTTCAATGCTAGAAGA
TGCGATCGACGTTTTATCACGCTTTGCATTCGATGGCGACAAACACAATTTACAGCAGCTACGCGAACTTGGTGGAGAAT
TCACTCGCCTAGCAGATAAATTGGGGGATAACGGTAAAAATAAGGCTGATATGGTTCGTGAGCTATTAGTCGAAGTCATG
AAGGCGACACTAAAGTATTGGGAAACCGCTTCGCAAAAAACAAAGTTTGAATTAGCGGAAGAAAGTGGCTTATGGCGCGT
ATATTTAGATAGGAGTACCTTACAAACGCGGACTCTAGATAAATACCTGCATGTTGAAACTTTACCTAAGACCCCACGCT
GGCGAACGGTCATTAACACTATCGACTTTGTATTAGAACGTTGCACTGATTCGTCCCTCGAACGTCATGAAGTGCAAACA
ATGCGAGACAAGCTACAGCACATTATTAGCCAATAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-682)

• HAMP domain (HAMP) (374-427)

3D structure

• AlphaFold DB: Q6LUS6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	57.358	99.735	0.572