Detailed information NTG0238679

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C8257_RS07595
• Genome accession: NZ_CP028162
• Coordinates: 1549190..1550194 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain MRSN12280
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1544190..1555194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C8257_RS07565 (C8257_07565)	fghA	1544282..1545133 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
C8257_RS07570 (C8257_07570)	ispF	1545204..1545677 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C8257_RS07575 (C8257_07575)	truD	1545674..1546741 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
C8257_RS07580 (C8257_07580)	surE	1546729..1547478 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
C8257_RS07585 (C8257_07585)	-	1547511..1548146 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
C8257_RS07590 (C8257_07590)	-	1548192..1549085 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
C8257_RS07595 (C8257_07595)	rpoS	1549190..1550194 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
C8257_RS07600 (C8257_07600)	fdxA	1550621..1550944 (-)	324	WP_003092272.1	ferredoxin FdxA	-
C8257_RS07605 (C8257_07605)	mutS	1551011..1553578 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
C8257_RS07615 (C8257_07615)	-	1553704..1554711 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=238679 C8257_RS07595 WP_003113871.1 1549190..1550194(+) (rpoS) [Pseudomonas aeruginosa strain MRSN12280]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=238679 C8257_RS07595 WP_003113871.1 1549190..1550194(+) (rpoS) [Pseudomonas aeruginosa strain MRSN12280]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653