Detailed information NTG0238644

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CEQ48_RS16195
• Genome accession: NZ_CP022353
• Coordinates: 2293147..2294157 (-)
• Length: 336 a.a.
• NCBI ID: WP_089071941.1
• Uniprot ID: A0AAU8WJ41
• Organism: Vibrio tarriae strain 2521-89
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2288147..2299157

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CEQ48_RS16185 (CEQ48_16185)	cysM	2289326..2290213 (+)	888	WP_001279365.1	cysteine synthase CysM	-
CEQ48_RS16190 (CEQ48_16190)	mutS	2290480..2293068 (+)	2589	WP_089072387.1	DNA mismatch repair protein MutS	-
CEQ48_RS16195 (CEQ48_16195)	rpoS	2293147..2294157 (-)	1011	WP_089071941.1	RNA polymerase sigma factor RpoS	Regulator
CEQ48_RS16200 (CEQ48_16200)	nlpD	2294231..2295166 (-)	936	WP_089071942.1	murein hydrolase activator NlpD	-
CEQ48_RS16205 (CEQ48_16205)	-	2295166..2295792 (-)	627	WP_089071943.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CEQ48_RS16210 (CEQ48_16210)	surE	2295785..2296537 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
CEQ48_RS16215 (CEQ48_16215)	truD	2296539..2297624 (-)	1086	WP_089071944.1	tRNA pseudouridine(13) synthase TruD	-
CEQ48_RS16220 (CEQ48_16220)	ispF	2297654..2298130 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CEQ48_RS16225 (CEQ48_16225)	ispD	2298127..2298825 (-)	699	WP_089071945.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CEQ48_RS16230 (CEQ48_16230)	ftsB	2298825..2299106 (-)	282	WP_176446029.1	cell division protein FtsB	-

Sequence

Protein

• Length: 336 a.a.
• Molecular weight: 38630.53 Da
• Isoelectric Point: 4.3648

>NTDB_id=238644 CEQ48_RS16195 WP_089071941.1 2293147..2294157(-) (rpoS) [Vibrio tarriae strain 2521-89]
MSVSNTVTKVEEFDFEDEALEVLETDAELANDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDVN

Nucleotide

• Length: 1011 bp

>NTDB_id=238644 CEQ48_RS16195 WP_089071941.1 2293147..2294157(-) (rpoS) [Vibrio tarriae strain 2521-89]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAATGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACCGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGCGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTTTGGTGGTAAAAATTTC
ACGCCGTTACAGTAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATAGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACACCAATTGGTGGTGATGGGGATAAGGCGCTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCGACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
CAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTGCTGGGTTATGAGCCGTCTACTTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGAGTACGCCAAATCCAAGTGGAAGGCTTACGTCGTCTGCGTGAGATTCTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAACGTTGAATACGATGTCAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.401	99.405	0.988