Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CEQ48_RS16050 Genome accession   NZ_CP022353
Coordinates   2266678..2267196 (-) Length   172 a.a.
NCBI ID   WP_089071927.1    Uniprot ID   A0AAU8WIQ5
Organism   Vibrio tarriae strain 2521-89     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2261678..2272196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS16025 (CEQ48_16025) rimM 2261787..2262341 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  CEQ48_RS16030 (CEQ48_16030) rpsP 2262369..2262617 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  CEQ48_RS16035 (CEQ48_16035) ffh 2262853..2264238 (-) 1386 WP_000462715.1 signal recognition particle protein -
  CEQ48_RS16040 (CEQ48_16040) - 2264451..2265245 (+) 795 WP_089071925.1 inner membrane protein YpjD -
  CEQ48_RS16045 (CEQ48_16045) - 2265328..2266608 (+) 1281 WP_089071926.1 HlyC/CorC family transporter -
  CEQ48_RS16050 (CEQ48_16050) luxS 2266678..2267196 (-) 519 WP_089071927.1 S-ribosylhomocysteine lyase Regulator
  CEQ48_RS16055 (CEQ48_16055) gshA 2267245..2268819 (-) 1575 WP_089071928.1 glutamate--cysteine ligase -
  CEQ48_RS16060 (CEQ48_16060) - 2268931..2271786 (-) 2856 WP_198301177.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19089.91 Da        Isoelectric Point: 5.5197

>NTDB_id=238641 CEQ48_RS16050 WP_089071927.1 2266678..2267196(-) (luxS) [Vibrio tarriae strain 2521-89]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEHIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=238641 CEQ48_RS16050 WP_089071927.1 2266678..2267196(-) (luxS) [Vibrio tarriae strain 2521-89]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
GATGCAAGATGTGTTGAAAGTCGAAAGCCAAGAGCACATTCCTGAGCTGAATGAATACCAATGTGGCACCGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGTATTTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

99.419

100

0.994

Multiple sequence alignment