Detailed information NTG0023864

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: TRNA_RS26780
• Genome accession: NC_006270
• Coordinates: 1065704..1066822 (+)
• Length: 372 a.a.
• NCBI ID: WP_011197708.1
• Uniprot ID: Q65LU3
• Organism: Bacillus licheniformis DSM 13 = ATCC 14580
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1060704..1071822

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TRNA_RS26755 (BL02870)	-	1061351..1061704 (+)	354	WP_003180211.1	YlbF family regulator	-
TRNA_RS26765 (BL05091)	-	1062151..1063014 (+)	864	WP_011197705.1	Cof-type HAD-IIB family hydrolase	-
TRNA_RS26770 (BL02869)	-	1063157..1064665 (+)	1509	WP_011197706.1	coproporphyrinogen III oxidase	-
TRNA_RS26775 (BL02868)	-	1064801..1065577 (+)	777	WP_011197707.1	enoyl-CoA hydratase	-
TRNA_RS26780 (BL02867)	rapC	1065704..1066822 (+)	1119	WP_011197708.1	Rap family tetratricopeptide repeat protein	Regulator
TRNA_RS43830	-	1066812..1066949 (+)	138	WP_016886158.1	hypothetical protein	-
TRNA_RS26785 (BL07011)	-	1066954..1067232 (+)	279	WP_003180226.1	hypothetical protein	-
TRNA_RS26790 (BL02828)	-	1067307..1067492 (-)	186	WP_003180228.1	YhzD family protein	-
TRNA_RS26795 (BL02866)	-	1067610..1068506 (+)	897	WP_011197710.1	ABC transporter ATP-binding protein	-
TRNA_RS26800 (BL02865)	-	1068499..1069767 (+)	1269	WP_003180232.1	ABC transporter permease	-
TRNA_RS26805 (BL02863)	-	1069887..1071113 (+)	1227	WP_009328954.1	metallophosphoesterase family protein	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 43384.09 Da
• Isoelectric Point: 5.7199

>NTDB_id=23864 TRNA_RS26780 WP_011197708.1 1065704..1066822(+) (rapC) [Bacillus licheniformis DSM 13 = ATCC 14580]
MKQKIPSEYVARKLNDWYNAIRKNQIAASESLKAEILNDFQDMEENRDVLLYYSLLEFRHKLMLSYLKPKETENIEKNLR
DLEEKEDQMTGLLNYYYWFFKGMYEFKQKRFVKAIGCYKTAEQKVSALEDEVEKAEFYYKLAEIYYYINQRYLSINYATL
ASDIFNRYETLKEKKIFCDFIIAGNWVESMTYGPALKSLANALEDARKIKNSHLTAAAHFNLGNCYFHQESYREASDHME
SALSIFEQESSSYIPKVLYNLMYVRLKQGNHAGAAACYEKGIRSAASLGDEEHAAKLNILCGLYLDGGDQKAVENGFDYL
ESNHLYAAVEELALDAAQYYNQIERLKDSIFYYEKCAQASRKIKRGDALYES

Nucleotide

• Length: 1119 bp

>NTDB_id=23864 TRNA_RS26780 WP_011197708.1 1065704..1066822(+) (rapC) [Bacillus licheniformis DSM 13 = ATCC 14580]
TTGAAACAGAAGATTCCATCTGAATACGTTGCTAGAAAGCTGAATGATTGGTACAACGCCATTCGGAAAAATCAGATCGC
CGCCAGTGAATCATTGAAAGCGGAAATTTTAAATGATTTTCAAGACATGGAAGAAAATCGGGACGTCCTGCTCTACTATT
CGCTGCTTGAATTCAGGCATAAACTGATGCTCAGCTATTTGAAACCGAAAGAGACTGAAAATATTGAAAAAAACCTCCGC
GACTTAGAAGAAAAAGAAGACCAAATGACGGGTTTATTAAACTATTATTACTGGTTTTTTAAAGGGATGTATGAGTTCAA
ACAAAAGCGGTTCGTCAAAGCAATCGGCTGCTATAAAACGGCTGAACAAAAAGTCAGCGCACTGGAAGACGAGGTTGAAA
AAGCGGAATTTTATTATAAGCTTGCGGAAATCTACTATTATATCAACCAGAGATACCTGTCGATCAACTATGCGACGCTA
GCTTCCGACATTTTTAACCGGTATGAAACGCTAAAAGAAAAAAAGATTTTCTGCGATTTTATCATTGCCGGTAATTGGGT
TGAATCGATGACATACGGACCCGCGCTGAAAAGCCTGGCCAATGCGCTTGAAGACGCCAGGAAAATCAAAAACAGCCATT
TGACGGCAGCCGCTCATTTTAATTTGGGAAATTGCTATTTCCACCAAGAATCGTACCGGGAAGCCTCAGATCATATGGAG
AGCGCCCTTTCCATTTTTGAACAGGAAAGTTCATCATATATTCCCAAAGTGCTGTACAACTTGATGTACGTCCGTCTCAA
GCAGGGGAACCATGCCGGAGCTGCCGCCTGTTATGAAAAAGGCATCCGAAGCGCGGCATCGCTCGGGGATGAAGAACACG
CGGCAAAGCTTAACATTCTGTGCGGGCTGTATTTAGACGGAGGGGATCAGAAAGCCGTGGAAAACGGATTTGATTATTTG
GAGTCAAATCATTTATATGCTGCTGTTGAAGAGCTGGCTTTAGATGCAGCCCAGTATTATAATCAAATTGAGCGGCTGAA
AGATTCCATTTTTTACTATGAAAAGTGCGCTCAGGCAAGTCGAAAAATCAAAAGGGGAGATGCGTTGTATGAAAGCTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-248)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-64)

3D structure

• AlphaFold DB: Q65LU3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.166	100	0.374