Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CEQ48_RS12600 Genome accession   NZ_CP022353
Coordinates   1526954..1528378 (+) Length   474 a.a.
NCBI ID   WP_089071490.1    Uniprot ID   A0AAU8WPS8
Organism   Vibrio tarriae strain 2521-89     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1521954..1533378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS12580 (CEQ48_12580) - 1522349..1523134 (-) 786 WP_089071487.1 adenosylcobinamide-GDP ribazoletransferase -
  CEQ48_RS12585 (CEQ48_12585) cobT 1523134..1524159 (-) 1026 WP_198301143.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  CEQ48_RS12590 (CEQ48_12590) msrB 1524644..1525090 (-) 447 WP_000935882.1 peptide-methionine (R)-S-oxide reductase MsrB -
  CEQ48_RS12595 (CEQ48_12595) - 1525436..1526809 (+) 1374 WP_198301144.1 L-cystine transporter -
  CEQ48_RS12600 (CEQ48_12600) sbcB 1526954..1528378 (+) 1425 WP_089071490.1 exodeoxyribonuclease I Machinery gene
  CEQ48_RS12605 (CEQ48_12605) - 1528410..1528784 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  CEQ48_RS12610 (CEQ48_12610) - 1528775..1529449 (+) 675 WP_089071491.1 LrgB family protein -
  CEQ48_RS12615 (CEQ48_12615) cdd 1529619..1530506 (+) 888 WP_089071492.1 cytidine deaminase -
  CEQ48_RS12620 (CEQ48_12620) - 1530665..1531540 (+) 876 WP_089071493.1 AEC family transporter -
  CEQ48_RS12625 (CEQ48_12625) purT 1531694..1532869 (+) 1176 WP_032477225.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54549.91 Da        Isoelectric Point: 6.2276

>NTDB_id=238633 CEQ48_RS12600 WP_089071490.1 1526954..1528378(+) (sbcB) [Vibrio tarriae strain 2521-89]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLMDLDAETLQARLYTRHEDLAPDERPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=238633 CEQ48_RS12600 WP_089071490.1 1526954..1528378(+) (sbcB) [Vibrio tarriae strain 2521-89]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGATTACGAGACTTGGGGAGTCAATCCTGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTGATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTGGCGGAGCCA
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCACCAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGATGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACTAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTAATGGATCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGCATGAAGACCTAGCGCCGGATGAGCGAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCCATTCTGGCTCCGGCTAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAGCTGGT
GACTGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCAATGGAGATCATCCGCACTACTGCACCGGAGAATCTGGGCAGCTTAGCGATCCGGGTGGCCGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.523

100

0.985

Multiple sequence alignment