Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CEQ48_RS05950 Genome accession   NZ_CP022353
Coordinates   105452..106084 (-) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio tarriae strain 2521-89     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 100452..111084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS05930 (CEQ48_05930) - 100618..101829 (+) 1212 WP_000215480.1 aspartate aminotransferase family protein -
  CEQ48_RS05935 (CEQ48_05935) astA 101969..102988 (+) 1020 WP_089070630.1 arginine N-succinyltransferase -
  CEQ48_RS05940 (CEQ48_05940) astD 102998..104455 (+) 1458 WP_089070631.1 succinylglutamate-semialdehyde dehydrogenase -
  CEQ48_RS05945 (CEQ48_05945) - 104598..105389 (+) 792 WP_089070632.1 DUF1338 domain-containing protein -
  CEQ48_RS05950 (CEQ48_05950) crp 105452..106084 (-) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  CEQ48_RS05955 (CEQ48_05955) - 106327..107196 (-) 870 WP_001274667.1 phosphoribulokinase -
  CEQ48_RS05960 (CEQ48_05960) - 107293..107502 (-) 210 WP_000586561.1 YheU family protein -
  CEQ48_RS05965 (CEQ48_05965) - 107631..108620 (-) 990 WP_089070633.1 hydrolase -
  CEQ48_RS05970 (CEQ48_05970) - 108617..109102 (-) 486 WP_001278735.1 TIGR02444 family protein -
  CEQ48_RS05975 (CEQ48_05975) - 109103..111019 (-) 1917 WP_089070634.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=238620 CEQ48_RS05950 WP_000242749.1 105452..106084(-) (crp) [Vibrio tarriae strain 2521-89]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=238620 CEQ48_RS05950 WP_000242749.1 105452..106084(-) (crp) [Vibrio tarriae strain 2521-89]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGTGAGAAGGCGGAAACGCTGTATTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTCGGCCTGTTTGAAGAAGGT
CAAGAGCGTACCGCTTGGGTTCGTGCCAAAACACCGTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAGTTAAT
CCAAGTTAACCCAGACATTTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAATCTTGCACGTCAGCCAGATGCGATGACTCAC
CCTGATGGCATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAATCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment