Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LL14B4_RS09175 Genome accession   NZ_CP028160
Coordinates   1879892..1880563 (-) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis subsp. lactis strain 14B4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1874892..1885563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL14B4_RS09150 (LL14B4_09140) pheA 1875197..1876036 (-) 840 WP_014570689.1 prephenate dehydratase -
  LL14B4_RS09155 (LL14B4_09145) - 1876038..1876526 (-) 489 WP_058211658.1 shikimate kinase -
  LL14B4_RS09160 (LL14B4_09150) aroA 1876550..1877842 (-) 1293 WP_103055050.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  LL14B4_RS09165 (LL14B4_09155) - 1877963..1879027 (-) 1065 WP_010906116.1 prephenate dehydrogenase -
  LL14B4_RS09170 (LL14B4_09160) - 1879030..1879905 (-) 876 WP_012898325.1 sensor histidine kinase -
  LL14B4_RS09175 (LL14B4_09165) braR 1879892..1880563 (-) 672 WP_003132782.1 response regulator transcription factor Regulator
  LL14B4_RS09180 (LL14B4_09170) - 1880566..1881630 (-) 1065 WP_017864900.1 VanZ family protein -
  LL14B4_RS09190 (LL14B4_09180) - 1881812..1883815 (-) 2004 WP_058211660.1 ABC transporter permease -
  LL14B4_RS09195 (LL14B4_09185) - 1883808..1884587 (-) 780 WP_012898329.1 ABC transporter ATP-binding protein -
  LL14B4_RS13455 - 1884602..1884745 (-) 144 WP_014570691.1 hypothetical protein -
  LL14B4_RS09200 (LL14B4_09190) - 1884776..1885126 (-) 351 WP_109991121.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=238620 LL14B4_RS09175 WP_003132782.1 1879892..1880563(-) (braR) [Lactococcus lactis subsp. lactis strain 14B4]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=238620 LL14B4_RS09175 WP_003132782.1 1879892..1880563(-) (braR) [Lactococcus lactis subsp. lactis strain 14B4]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGACATGAATCAAGTAACCGCTATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413

Multiple sequence alignment