Detailed information NTG0238581

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: CAV_RS08220
• Genome accession: NZ_CP022347
• Coordinates: 1620522..1621883 (+)
• Length: 453 a.a.
• NCBI ID: WP_245807443.1
• Uniprot ID: -
• Organism: Campylobacter avium LMG 24591
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1615522..1626883

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CAV_RS08210 (CAV_1619)	nifJ	1616629..1620204 (+)	3576	WP_094324357.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
CAV_RS08215 (CAV_1620)	-	1620287..1620526 (+)	240	WP_094324358.1	hypothetical protein	-
CAV_RS08220 (CAV_1621)	ctsD	1620522..1621883 (+)	1362	WP_245807443.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
CAV_RS08225 (CAV_1622)	-	1621880..1622566 (+)	687	WP_094324360.1	ATP-binding protein	-
CAV_RS08230 (CAV_1623)	-	1622581..1623150 (+)	570	WP_148131199.1	transformation system protein	-
CAV_RS08235 (CAV_1624)	-	1623159..1624202 (+)	1044	WP_094324362.1	AI-2E family transporter	-
CAV_RS08240 (CAV_1625)	-	1624199..1624708 (-)	510	WP_094324363.1	DUF2393 family protein	-
CAV_RS08245 (CAV_1626)	-	1624709..1625242 (-)	534	WP_094324364.1	DUF2393 family protein	-
CAV_RS08250 (CAV_1627)	-	1625253..1626305 (-)	1053	WP_094324365.1	prohibitin family protein	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 50483.08 Da
• Isoelectric Point: 4.8743

>NTDB_id=238581 CAV_RS08220 WP_245807443.1 1620522..1621883(+) (ctsD) [Campylobacter avium LMG 24591]
MSLSLFLCLNLHATCSSRLFDVAVVSELSNYEILEHFSKLCSFSIILKDDLAKEKLELMQKNINAKQVNLDELFDLLIKE
QNLHYDYNGKILRISSIKTQSFKLNYITSVREGQSVTKASVDSKSIQNDYSNTDVNLDDNMIKSLEKFDFWQNIEKEIQA
ILSSENEKAASPIINQNAGLITVSGSAKQLQRVQTYIQNLQNRLKKQVIIDVSIIAVSLDKSSSSGINWQNFNLTLNSNN
QENAANNGFILNLGLNANLDSVMNFLSQNGKTRTLSNPKLLALNNQQAIISVGDTINYQVRESSKSTESGTTVSESYNNY
SIFVGILLNILPEISDDGKIMLRINPSLSSFKYAQDNKRQESPRTIAPDTVQKKLSTVVSMENEQTLILGGLISHSDSTD
ESSVNFLSKIPVLSWFFEGSNEVSSSTEIVFIIKPIIIDTQEAPTLSDLGFSI

Nucleotide

• Length: 1362 bp

>NTDB_id=238581 CAV_RS08220 WP_245807443.1 1620522..1621883(+) (ctsD) [Campylobacter avium LMG 24591]
ATTAGTCTAAGTTTATTTCTTTGCTTAAATTTACACGCAACTTGCTCTTCAAGGCTGTTTGATGTGGCTGTTGTAAGTGA
GTTAAGCAACTACGAAATTTTAGAGCATTTCTCAAAATTATGTTCTTTTAGCATCATCTTAAAAGATGACTTAGCGAAAG
AAAAATTAGAACTTATGCAAAAAAATATAAACGCAAAGCAAGTAAATTTGGACGAACTTTTTGACTTGCTTATAAAAGAA
CAAAACCTGCATTACGATTATAACGGCAAAATTTTACGCATTTCTAGCATAAAAACACAAAGTTTTAAGTTAAATTATAT
CACCTCCGTGCGAGAGGGACAAAGCGTAACAAAGGCATCGGTGGATTCTAAATCCATACAAAATGACTACTCAAATACGG
ATGTAAATCTAGATGATAATATGATAAAAAGTTTAGAAAAATTTGATTTTTGGCAAAATATAGAAAAAGAAATACAAGCT
ATCTTAAGCAGCGAAAATGAAAAAGCAGCAAGCCCGATAATCAATCAAAATGCAGGCTTAATAACAGTAAGCGGGAGCGC
GAAACAGCTTCAAAGAGTGCAAACATACATACAAAATTTACAAAACAGGCTTAAAAAACAAGTCATAATCGATGTAAGCA
TTATAGCTGTAAGCCTTGATAAAAGCAGTTCTAGCGGGATTAATTGGCAAAATTTTAACCTAACGCTTAATTCTAATAAT
CAAGAAAATGCTGCGAATAATGGATTTATCTTGAATTTAGGCCTAAATGCGAATTTAGACTCTGTGATGAATTTCTTATC
TCAAAATGGCAAGACAAGAACCCTATCAAACCCAAAACTACTAGCCCTAAACAACCAGCAAGCAATCATTTCTGTGGGAG
ATACCATAAACTATCAAGTAAGAGAAAGCTCAAAAAGCACGGAAAGCGGCACGACTGTTAGCGAAAGCTACAATAACTAC
TCTATTTTTGTGGGAATTTTGCTAAATATCTTGCCAGAAATTTCAGATGATGGCAAAATCATGCTTAGAATTAACCCATC
TTTAAGTTCCTTTAAATACGCACAAGATAATAAAAGACAAGAAAGTCCCCGCACGATAGCACCAGATACAGTGCAAAAAA
AGCTATCCACTGTAGTATCTATGGAAAATGAGCAAACACTGATTTTAGGTGGCTTGATAAGTCATAGCGATTCTACAGAT
GAAAGCTCTGTAAATTTCTTATCAAAAATTCCTGTCCTATCGTGGTTTTTTGAAGGCTCAAACGAGGTCTCAAGCTCAAC
TGAAATAGTTTTCATAATAAAGCCAATTATCATAGATACGCAAGAAGCACCTACCTTGAGTGATTTGGGTTTTTCCATAT
GA

Domains

Predicted by InterproScan.

• Secretin N-terminal domain (Secretin_N_2) (99-167)

• Bacterial type II and III secretion system protein (Secretin) (266-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	65.217	100	0.662