Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CAV_RS03110 Genome accession   NZ_CP022347
Coordinates   595551..596303 (+) Length   250 a.a.
NCBI ID   WP_094325055.1    Uniprot ID   A0A222MX63
Organism   Campylobacter avium LMG 24591     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 590551..601303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAV_RS03080 (CAV_0616) thrC 591018..592421 (-) 1404 WP_094325049.1 threonine synthase -
  CAV_RS03085 (CAV_0617) - 592402..593349 (-) 948 WP_094325050.1 tetraacyldisaccharide 4'-kinase -
  CAV_RS03090 (CAV_0618) - 593339..594085 (-) 747 WP_094325051.1 NAD+ synthase -
  CAV_RS03095 (CAV_0619) - 594143..594745 (+) 603 WP_094325052.1 MBL fold metallo-hydrolase -
  CAV_RS03100 (CAV_0620) - 594738..595061 (+) 324 WP_094325053.1 hypothetical protein -
  CAV_RS03105 (CAV_0621) fliW 595154..595573 (+) 420 WP_094325054.1 flagellar assembly protein FliW -
  CAV_RS03110 (CAV_0622) proC 595551..596303 (+) 753 WP_094325055.1 pyrroline-5-carboxylate reductase Machinery gene
  CAV_RS03115 (CAV_0623) - 596300..596617 (+) 318 WP_094325056.1 hypothetical protein -
  CAV_RS03120 (CAV_0624) - 596601..597305 (+) 705 WP_148131216.1 hypothetical protein -
  CAV_RS03125 (CAV_0625) - 597298..597741 (+) 444 WP_094325058.1 hypothetical protein -
  CAV_RS03130 (CAV_0626) - 597773..598207 (-) 435 WP_094325059.1 copper resistance protein CopD -
  CAV_RS03135 (CAV_0627) - 598212..598805 (-) 594 WP_094325060.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27576.12 Da        Isoelectric Point: 7.1088

>NTDB_id=238570 CAV_RS03110 WP_094325055.1 595551..596303(+) (proC) [Campylobacter avium LMG 24591]
MRAKNKSEIYILGNGAMAKALALALKDDYELYVVARNTSNLSFFKQNNIKTMFYDEFDMSGKTVILAFKPYVLKLMKDSL
QARARIVISVLAGISLDELSVLNADNIVRIMPNIAAKYKASTTTFIRQNELYKDEILELIQSFGDAFELEKEELFDAAMV
ISGCAPAFLSIIAESMANAALCEGLTNKLSYDLVKSLFKGYHNLLSNEHPALIKEQICSPAGVTIKGVKALEEEGVRAAF
FKAFAASLGK

Nucleotide


Download         Length: 753 bp        

>NTDB_id=238570 CAV_RS03110 WP_094325055.1 595551..596303(+) (proC) [Campylobacter avium LMG 24591]
ATGAGAGCAAAGAACAAAAGTGAAATTTACATCTTAGGAAACGGTGCTATGGCTAAGGCTTTAGCTTTAGCACTTAAAGA
TGATTATGAACTTTATGTAGTCGCAAGAAACACTAGTAATCTTTCTTTTTTCAAGCAAAATAATATCAAGACCATGTTTT
ATGATGAGTTTGATATGAGTGGCAAGACTGTGATTTTAGCTTTCAAGCCTTATGTTTTAAAGCTTATGAAAGATAGCTTA
CAAGCTAGGGCTAGGATTGTGATTTCAGTTTTAGCCGGTATAAGCTTAGATGAACTTAGTGTTTTAAACGCTGATAATAT
AGTAAGAATTATGCCAAATATAGCCGCTAAATACAAAGCTTCAACAACCACATTTATAAGACAAAATGAGCTTTATAAGG
ATGAAATTTTAGAGCTTATACAAAGTTTTGGCGATGCTTTTGAGCTTGAAAAAGAAGAGCTGTTTGACGCTGCGATGGTG
ATTAGCGGTTGTGCACCGGCCTTTTTGTCAATAATAGCTGAAAGTATGGCAAATGCTGCTTTGTGCGAGGGTCTTACAAA
TAAACTTAGTTACGACCTGGTTAAATCTCTTTTTAAAGGCTATCATAATCTCTTAAGCAATGAACATCCAGCCTTGATAA
AAGAGCAAATTTGCTCACCTGCTGGAGTTACCATAAAAGGCGTTAAGGCTTTGGAGGAAGAGGGCGTAAGGGCTGCGTTT
TTTAAGGCTTTTGCTGCGTCTTTGGGAAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(9-93)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(152-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A222MX63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

53.719

96.8

0.52

Multiple sequence alignment