Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CAV_RS01655 Genome accession   NZ_CP022347
Coordinates   323349..324284 (-) Length   311 a.a.
NCBI ID   WP_094752795.1    Uniprot ID   -
Organism   Campylobacter avium LMG 24591     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 318349..329284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAV_RS01630 (CAV_0322) - 318971..319867 (-) 897 WP_094324780.1 cation diffusion facilitator family transporter -
  CAV_RS01635 (CAV_0323) - 319858..320838 (-) 981 WP_094324781.1 agmatine deiminase family protein -
  CAV_RS08860 (CAV_0324) - 320936..321112 (-) 177 WP_157676303.1 hypothetical protein -
  CAV_RS01640 (CAV_0325) - 321151..321759 (-) 609 WP_094324782.1 thiamine phosphate synthase -
  CAV_RS01645 (CAV_0326) thiH 321749..322888 (-) 1140 WP_245807419.1 2-iminoacetate synthase ThiH -
  CAV_RS01650 (CAV_0327) - 322982..323365 (+) 384 WP_094324783.1 DUF4878 domain-containing protein -
  CAV_RS01655 (CAV_0328) waaF 323349..324284 (-) 936 WP_094752795.1 glycosyltransferase family 9 protein Regulator
  CAV_RS01660 (CAV_0329) - 324397..326520 (-) 2124 WP_094324785.1 cation-translocating P-type ATPase -
  CAV_RS01665 (CAV_0330) - 326520..326723 (-) 204 WP_094324786.1 heavy-metal-associated domain-containing protein -
  CAV_RS01670 (CAV_0331) - 326782..327090 (-) 309 WP_094324787.1 multidrug efflux SMR transporter -
  CAV_RS01675 (CAV_0332) - 327090..327431 (-) 342 WP_094324788.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35774.08 Da        Isoelectric Point: 9.6916

>NTDB_id=238568 CAV_RS01655 WP_094752795.1 323349..324284(-) (waaF) [Campylobacter avium LMG 24591]
MNNHDKKYIFVNLPTWLGDAVMCSAALKALFAHFKDYHFVLFGSFVSCELFKDLQNVSIELENKKKRYLNYIKFAKKYKF
DYAFSFRSAASARILLFLLKTKKRYVYNKYKHQDKHQVLRYIKFIEESLNIDIEDKELFLPFKKIKSDKKLLGISAGAKY
GEAKIWEPSYFASSALSLKDTHTILLFGSKEELELNKSIEEELLKGGARVVNLCGKTSIKELCEHISSLDLLLCNDSGAM
HIGAVYKIKTAAIFGPTNFTKTSPWLNENARLLHLNLPCMPCMKRICPLKHNACMRDLKPDFVISVLKDLV

Nucleotide


Download         Length: 936 bp        

>NTDB_id=238568 CAV_RS01655 WP_094752795.1 323349..324284(-) (waaF) [Campylobacter avium LMG 24591]
ATGAACAATCATGATAAAAAATACATCTTCGTAAATTTGCCTACTTGGCTTGGAGATGCTGTTATGTGCTCTGCGGCTTT
AAAGGCTTTGTTTGCACATTTTAAAGACTATCATTTTGTCTTATTTGGCTCCTTTGTATCTTGTGAGCTATTTAAAGATT
TACAAAATGTAAGCATAGAGCTTGAAAACAAAAAAAAGCGTTATCTAAACTACATAAAATTTGCTAAAAAATATAAGTTT
GATTATGCCTTTTCCTTTAGAAGTGCAGCTTCAGCTAGAATTTTACTCTTTCTTTTAAAGACAAAAAAAAGATATGTTTA
TAATAAATACAAACACCAAGACAAACACCAAGTGCTTAGATACATAAAATTCATAGAAGAAAGCTTGAATATAGACATAG
AGGATAAGGAGCTTTTCTTGCCCTTTAAAAAGATAAAAAGCGATAAAAAGCTACTTGGTATAAGTGCAGGAGCTAAGTAT
GGAGAGGCTAAGATATGGGAGCCAAGTTATTTTGCAAGCTCTGCTTTAAGCCTTAAAGATACTCACACCATCTTACTCTT
TGGTTCAAAAGAAGAGCTTGAGCTTAATAAAAGCATAGAAGAAGAGCTTTTAAAAGGCGGTGCTAGGGTTGTGAATTTAT
GCGGAAAAACTAGTATAAAAGAGCTGTGTGAACATATCTCAAGTCTAGATTTATTATTATGCAATGATAGCGGTGCTATG
CACATAGGTGCTGTTTATAAGATAAAAACCGCAGCTATCTTTGGTCCTACAAATTTCACAAAGACAAGCCCTTGGCTAAA
TGAAAACGCAAGGCTTCTTCATTTAAATTTACCTTGTATGCCTTGTATGAAAAGGATTTGCCCCCTAAAGCATAATGCCT
GTATGAGGGACTTAAAGCCAGACTTTGTGATAAGTGTGCTTAAAGACTTAGTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(114-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.244

100

0.524

Multiple sequence alignment