Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CCX84_RS25840 Genome accession   NZ_CP022345
Coordinates   4837762..4838046 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain c25     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4832762..4843046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX84_RS25825 rnmV 4833590..4834147 (-) 558 WP_000692835.1 ribonuclease M5 -
  CCX84_RS25830 - 4834362..4835129 (-) 768 WP_000895843.1 TatD family hydrolase -
  CCX84_RS25835 metG 4835295..4837277 (-) 1983 WP_000134135.1 methionine--tRNA ligase -
  CCX84_RS25840 abrB 4837762..4838046 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CCX84_RS25845 rsmI 4838067..4838942 (-) 876 WP_000267820.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CCX84_RS25850 - 4838911..4839201 (-) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  CCX84_RS25855 - 4839188..4839928 (-) 741 WP_001055367.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CCX84_RS25860 yabA 4840011..4840361 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  CCX84_RS25865 - 4840376..4841203 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  CCX84_RS25870 holB 4841209..4842192 (-) 984 WP_000169563.1 DNA polymerase III subunit delta' -
  CCX84_RS25875 tmk 4842228..4842854 (-) 627 WP_000677214.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=238555 CCX84_RS25840 WP_000843036.1 4837762..4838046(+) (abrB) [Bacillus thuringiensis strain c25]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=238555 CCX84_RS25840 WP_000843036.1 4837762..4838046(+) (abrB) [Bacillus thuringiensis strain c25]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment