Detailed information NTG0238553

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: CCX84_RS25530
• Genome accession: NZ_CP022345
• Coordinates: 4779561..4780937 (-)
• Length: 458 a.a.
• NCBI ID: WP_061140079.1
• Uniprot ID: A0A9X7LRB7
• Organism: Bacillus thuringiensis strain c25
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4774561..4785937

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCX84_RS25510	ispF	4775924..4776400 (-)	477	WP_000488391.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CCX84_RS25515	ispD	4776517..4777197 (-)	681	WP_000288282.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CCX84_RS25520	-	4777214..4778323 (-)	1110	WP_000919677.1	PIN/TRAM domain-containing protein	-
CCX84_RS25525	disA	4778484..4779557 (-)	1074	WP_000392158.1	DNA integrity scanning diadenylate cyclase DisA	-
CCX84_RS25530	radA	4779561..4780937 (-)	1377	WP_061140079.1	DNA repair protein RadA	Machinery gene
CCX84_RS25535	clpC	4781033..4783468 (-)	2436	WP_000971184.1	ATP-dependent protease ATP-binding subunit ClpC	Regulator
CCX84_RS25540	-	4783491..4784555 (-)	1065	WP_000050842.1	protein arginine kinase	-
CCX84_RS25545	-	4784560..4785108 (-)	549	WP_000128398.1	UvrB/UvrC motif-containing protein	-
CCX84_RS25550	ctsR	4785279..4785740 (-)	462	WP_001244557.1	transcriptional regulator CtsR	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 49856.53 Da
• Isoelectric Point: 7.1422

>NTDB_id=238553 CCX84_RS25530 WP_061140079.1 4779561..4780937(-) (radA) [Bacillus thuringiensis strain c25]
MAKKKTKFTCQECGYQSPKYMGKCPGCGQWNSLVEEMEPVVSSRRLNYANAIQTEVTKPRRLIEVETKSEARIETKFQEF
NRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADASYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIA
AHIEEMNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLT
GEIRRVSRIEQRVQEAAKLGFQRAIIPRKNLGGWTIPEGIEVVGVSNLGEALRLTLGG

Nucleotide

• Length: 1377 bp

>NTDB_id=238553 CCX84_RS25530 WP_061140079.1 4779561..4780937(-) (radA) [Bacillus thuringiensis strain c25]
ATGGCTAAAAAGAAAACAAAATTCACATGTCAAGAGTGTGGTTATCAATCACCAAAATATATGGGTAAATGTCCAGGGTG
TGGTCAATGGAATTCGCTTGTTGAAGAGATGGAACCCGTTGTATCATCCAGACGCCTAAATTATGCAAATGCAATTCAAA
CAGAAGTAACAAAACCAAGACGTCTTATAGAAGTAGAAACAAAGTCTGAGGCACGTATTGAAACAAAATTTCAGGAGTTT
AACCGTGTACTAGGTGGCGGAATTGTAGATGGATCTTTAGTACTTATTGGTGGGGACCCTGGGATTGGAAAATCAACGTT
ATTATTACAGATTTCCTCGCAATTAGCAGATGCTTCATATGATGTATTGTATATATCAGGTGAGGAGTCAGCAAAGCAGA
TTAAACTTCGTGCAGATCGTTTACATGTAAATGGTAGTAATCTATTTGTTGTATCAGAGACAGATTTACAGCGTATTGCA
GCACATATTGAAGAGATGAATCCTGCTTTTGTTGTTATTGATTCTATTCAAACGATACATTTACCTGAAGTGACATCAGC
TCCTGGTAGTGTGGCGCAAGTACGTGAATGTACAGCAGAATTAATGAAACTTGCAAAAACAAAGGGAATCCCAATTTTCA
TCGTAGGGCATGTGACAAAAGAAGGTGCAATTGCGGGACCGCGTATGCTAGAACATATGGTCGATGCAGTTCTTTACTTT
GAAGGAGATCGACACCATACATATCGTATTTTACGAGCTGTAAAGAATCGTTTTGGTTCTACGAATGAAATGGGTATCTT
TGAAATGAAAGAACTTGGCCTTGCAGAAGTCTTAAATCCTTCTGAAATTTTCCTTGAGGAAAGACCAGTTGGAGTTGCAG
GTTCAACAGTAGTTGCCTCAATGGAAGGAACAAGACCAGTTTTAGTAGAAATACAGGCATTAATTTCCCCTACTAGTTTT
GGAAATCCTCGAAGAATGGCGACAGGAATTGATCATAATCGTGTCTCGCTTATTATGGCGGTACTAGAGAAAAGAACAGG
TTTACTATTACAAAATCAAGATGCGTATTTAAAAGTAGCTGGTGGTTTGAAATTAGATGAACCGGCAATTGATTTAGCTG
TTGCCTTAAGTATAGCTTCAAGTTTTAGAGATAAATCTACGGCACCAACTGATGCGGTAATAGGAGAAGTTGGATTAACT
GGAGAAATAAGAAGAGTATCAAGAATCGAACAACGTGTACAAGAAGCAGCTAAATTAGGATTTCAACGTGCTATCATTCC
TAGAAAAAATTTAGGGGGGTGGACAATTCCAGAGGGGATTGAGGTTGTAGGTGTTTCTAATTTAGGAGAAGCGCTTCGTT
TGACATTAGGAGGCTAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (363-430)

• AAA domain (AAA_25) (61-222)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	74.51	100	0.747
radA	Streptococcus pneumoniae Rx1	64.018	98.908	0.633
radA	Streptococcus pneumoniae D39	64.018	98.908	0.633
radA	Streptococcus pneumoniae R6	64.018	98.908	0.633
radA	Streptococcus pneumoniae TIGR4	64.018	98.908	0.633
radA	Streptococcus mitis SK321	64.018	98.908	0.633
radA	Streptococcus mitis NCTC 12261	63.797	98.908	0.631