Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CCX84_RS17930 Genome accession   NZ_CP022345
Coordinates   3369799..3370401 (+) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus thuringiensis strain c25     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3364799..3375401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX84_RS17885 gpsB 3365103..3365438 (-) 336 WP_000622431.1 cell division regulator GpsB -
  CCX84_RS17890 - 3365536..3366090 (-) 555 WP_000862915.1 DUF1273 domain-containing protein -
  CCX84_RS17895 - 3366147..3366575 (-) 429 WP_000546268.1 CotD family spore coat protein -
  CCX84_RS17900 - 3366731..3367255 (-) 525 WP_030024706.1 YppG family protein -
  CCX84_RS17905 - 3367433..3367624 (+) 192 WP_000242652.1 YppF family protein -
  CCX84_RS17910 - 3367651..3367995 (-) 345 WP_000786940.1 YppE family protein -
  CCX84_RS17915 - 3368011..3368253 (-) 243 WP_001252036.1 hypothetical protein -
  CCX84_RS31100 - 3368339..3368518 (+) 180 WP_001987054.1 hypothetical protein -
  CCX84_RS17925 - 3368670..3369695 (-) 1026 WP_000495651.1 DUF2515 domain-containing protein -
  CCX84_RS17930 recU 3369799..3370401 (+) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  CCX84_RS17935 - 3370468..3373167 (+) 2700 WP_001283099.1 PBP1A family penicillin-binding protein -
  CCX84_RS17940 - 3373194..3373712 (-) 519 WP_000442650.1 YpoC family protein -
  CCX84_RS17945 nth 3373716..3374363 (-) 648 WP_061139486.1 endonuclease III -
  CCX84_RS17950 dnaD 3374379..3375086 (-) 708 WP_000728552.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=238536 CCX84_RS17930 WP_000155598.1 3369799..3370401(+) (recU) [Bacillus thuringiensis strain c25]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=238536 CCX84_RS17930 WP_000155598.1 3369799..3370401(+) (recU) [Bacillus thuringiensis strain c25]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACCAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment