Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CCX84_RS16035 Genome accession   NZ_CP022345
Coordinates   3000333..3000620 (-) Length   95 a.a.
NCBI ID   WP_000648325.1    Uniprot ID   A0A9W5QIM5
Organism   Bacillus thuringiensis strain c25     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2995333..3005620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX84_RS16000 rsgA 2995813..2996865 (-) 1053 WP_001073075.1 ribosome small subunit-dependent GTPase A -
  CCX84_RS16005 - 2997018..2997574 (-) 557 Protein_3060 DinB family protein -
  CCX84_RS16010 - 2997771..2998118 (+) 348 WP_000426317.1 DUF4257 domain-containing protein -
  CCX84_RS16015 - 2998203..2998427 (+) 225 WP_000162602.1 hypothetical protein -
  CCX84_RS31095 - 2998467..2998673 (-) 207 WP_001101740.1 hypothetical protein -
  CCX84_RS16025 - 2998722..2999060 (-) 339 Protein_3064 MFS transporter permease -
  CCX84_RS16030 - 2999109..3000056 (-) 948 WP_000099756.1 serine protease -
  CCX84_RS16035 abrB 3000333..3000620 (-) 288 WP_000648325.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CCX84_RS16040 - 3000736..3002616 (-) 1881 WP_001026001.1 ABC transporter permease -
  CCX84_RS16045 nadE 3002886..3003704 (+) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  CCX84_RS16050 - 3003754..3004215 (-) 462 WP_000024999.1 NUDIX hydrolase -
  CCX84_RS16055 - 3004247..3004444 (-) 198 WP_001048101.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10529.28 Da        Isoelectric Point: 5.1367

>NTDB_id=238535 CCX84_RS16035 WP_000648325.1 3000333..3000620(-) (abrB) [Bacillus thuringiensis strain c25]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSGQNITLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=238535 CCX84_RS16035 WP_000648325.1 3000333..3000620(-) (abrB) [Bacillus thuringiensis strain c25]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGGGCAGAATATTACATTAGCAAATGGAAATATTACAGTTGGCATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment