Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   C9I27_RS07220 Genome accession   NZ_CP028148
Coordinates   1390473..1391138 (-) Length   221 a.a.
NCBI ID   WP_107114780.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TJ11-001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1385473..1396138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I27_RS07215 hpf 1389845..1390393 (-) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  C9I27_RS07220 comFC/cflB 1390473..1391138 (-) 666 WP_107114780.1 ComF family protein Machinery gene
  C9I27_RS07225 comFA/cflA 1391110..1392435 (-) 1326 WP_002988971.1 DEAD/DEAH box helicase Machinery gene
  C9I27_RS07230 - 1392490..1393122 (+) 633 WP_002988970.1 YigZ family protein -
  C9I27_RS07235 cysK 1393250..1394191 (+) 942 WP_002988967.1 cysteine synthase A -
  C9I27_RS07240 - 1394209..1394586 (-) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  C9I27_RS07245 - 1394586..1395986 (-) 1401 WP_002983672.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25162.43 Da        Isoelectric Point: 9.5775

>NTDB_id=238535 C9I27_RS07220 WP_107114780.1 1390473..1391138(-) (comFC/cflB) [Streptococcus pyogenes strain TJ11-001]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLNNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=238535 C9I27_RS07220 WP_107114780.1 1390473..1391138(-) (comFC/cflB) [Streptococcus pyogenes strain TJ11-001]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAAATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412

Multiple sequence alignment