Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   C9I27_RS06215 Genome accession   NZ_CP028148
Coordinates   1203131..1204093 (-) Length   320 a.a.
NCBI ID   WP_002989200.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TJ11-001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1198131..1209093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I27_RS06200 - 1198968..1199675 (-) 708 WP_002989211.1 O-methyltransferase -
  C9I27_RS06205 - 1199741..1200937 (-) 1197 WP_002989208.1 OFA family MFS transporter -
  C9I27_RS06210 pepF 1201313..1203118 (-) 1806 WP_002989205.1 oligoendopeptidase F Regulator
  C9I27_RS06215 coiA 1203131..1204093 (-) 963 WP_002989200.1 competence protein CoiA Machinery gene
  C9I27_RS06220 - 1204388..1205104 (-) 717 WP_002989197.1 pseudouridine synthase -
  C9I27_RS06225 nagB 1205223..1205927 (-) 705 WP_002989194.1 glucosamine-6-phosphate deaminase -
  C9I27_RS06230 queA 1206129..1207157 (+) 1029 WP_002989192.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  C9I27_RS06235 - 1207164..1208384 (+) 1221 WP_002989189.1 DUF3114 domain-containing protein -
  C9I27_RS06240 - 1208498..1209088 (-) 591 WP_002989185.1 serine hydrolase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37749.14 Da        Isoelectric Point: 10.1206

>NTDB_id=238526 C9I27_RS06215 WP_002989200.1 1203131..1204093(-) (coiA) [Streptococcus pyogenes strain TJ11-001]
MTKILTALDGKNQLISLVTQPISTKPPFCCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIEGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=238526 C9I27_RS06215 WP_002989200.1 1203131..1204093(-) (coiA) [Streptococcus pyogenes strain TJ11-001]
GTGACAAAAATATTAACCGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTTGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTCTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTTGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCACAATATTATGGAAATGTTTCGATTACCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTGAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTATAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

43.226

96.875

0.419
  coiA Streptococcus pneumoniae Rx1

41.935

96.875

0.406
  coiA Streptococcus pneumoniae D39

41.935

96.875

0.406
  coiA Streptococcus pneumoniae R6

41.935

96.875

0.406
  coiA Streptococcus pneumoniae TIGR4

41.935

96.875

0.406
  coiA Lactococcus lactis subsp. cremoris KW2

39.329

100

0.403

Multiple sequence alignment