Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CFN79_RS19485 Genome accession   NZ_CP022344
Coordinates   4223441..4224802 (-) Length   453 a.a.
NCBI ID   WP_104947556.1    Uniprot ID   -
Organism   Chromobacterium vaccinii strain XC0014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4218441..4229802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN79_RS19455 (CFN79_19400) - 4219264..4220226 (+) 963 WP_104947551.1 hypothetical protein -
  CFN79_RS19460 (CFN79_19405) - 4220261..4221016 (-) 756 WP_234004418.1 transporter substrate-binding domain-containing protein -
  CFN79_RS19465 (CFN79_19410) - 4221314..4221667 (+) 354 WP_021477625.1 DUF2325 domain-containing protein -
  CFN79_RS19470 (CFN79_19415) - 4221716..4222591 (-) 876 WP_104947553.1 hypothetical protein -
  CFN79_RS19475 (CFN79_19420) - 4222685..4222879 (-) 195 WP_104947554.1 zf-HC2 domain-containing protein -
  CFN79_RS19480 (CFN79_19425) - 4222876..4223436 (-) 561 WP_104947555.1 sigma-70 family RNA polymerase sigma factor -
  CFN79_RS19485 (CFN79_19430) radA 4223441..4224802 (-) 1362 WP_104947556.1 DNA repair protein RadA Machinery gene
  CFN79_RS19490 (CFN79_19435) - 4224875..4225411 (-) 537 WP_021477630.1 hypothetical protein -
  CFN79_RS19495 (CFN79_19440) - 4225426..4226187 (-) 762 WP_104947557.1 SDR family oxidoreductase -
  CFN79_RS19500 (CFN79_19445) hpnE 4226184..4227455 (-) 1272 WP_234004419.1 hydroxysqualene dehydroxylase HpnE -
  CFN79_RS19505 (CFN79_19450) hpnD 4227452..4228297 (-) 846 WP_104947559.1 presqualene diphosphate synthase HpnD -
  CFN79_RS19510 (CFN79_19455) hpnC 4228367..4229179 (-) 813 WP_021475118.1 squalene synthase HpnC -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48708.98 Da        Isoelectric Point: 6.8124

>NTDB_id=238507 CFN79_RS19485 WP_104947556.1 4223441..4224802(-) (radA) [Chromobacterium vaccinii strain XC0014]
MAKNKTVFSCTECGGQSPKWQGQCPHCNAWNTLTEAVAAPAAAGPRFQSWAANVTKVQKLSEVQTEEPPRDPSGIDELDR
VLGGGIVRGAVVLIGGDPGIGKSTLLLQALSQIGQNRKVLYVSGEESAQQIALRASRLALDTSSVDLLAEICIENILATL
KREQPEVVVIDSIQTLYTEQVTSAPGSVSQVRECAAQLTRMAKQSGITVLLVGHVTKEGSLAGPRVLEHMVDTVLYFEGD
SHSSYRMIRAIKNRFGAVNELGVFAMTDRGLKGVSNPSAIFLSSYRDDVAGSCVLVTQEGTRPLLVEIQALVDDCHGFQP
KRLTVGLEQNRLAMLLAVLHRHGGVACFDQDVFLNAVGGVKINEPAADLAIILAMVSSLRNKALPEKLVVFGEVGLAGEV
RPVTRGQERLKEAAKLGFTRAIVPSANKPRQEIEGLKVLAVDRLDQAVEYCRE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=238507 CFN79_RS19485 WP_104947556.1 4223441..4224802(-) (radA) [Chromobacterium vaccinii strain XC0014]
ATGGCCAAGAACAAAACCGTGTTCAGCTGCACCGAGTGCGGCGGACAATCGCCCAAGTGGCAGGGCCAGTGCCCGCATTG
CAATGCCTGGAACACGCTGACCGAGGCGGTGGCCGCGCCGGCCGCGGCCGGTCCGCGCTTCCAGTCGTGGGCGGCCAACG
TCACCAAGGTGCAGAAGCTGTCCGAGGTGCAGACCGAGGAACCCCCGCGCGATCCGTCCGGCATCGACGAACTGGACCGC
GTGCTGGGCGGCGGCATCGTCCGCGGCGCGGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCCACGCTGCTGTT
GCAGGCGCTGTCGCAGATAGGCCAGAACCGCAAGGTGCTGTACGTGTCCGGCGAGGAGTCGGCGCAGCAGATCGCGCTGC
GCGCGTCCCGGCTGGCGCTGGATACCAGCAGCGTCGACCTGTTGGCCGAAATCTGCATCGAGAACATCCTGGCCACGCTG
AAGCGGGAACAGCCCGAGGTGGTGGTGATCGATTCGATCCAGACGCTGTACACCGAGCAGGTGACTTCGGCGCCGGGCTC
GGTGTCGCAGGTGCGCGAGTGCGCGGCGCAGCTGACGCGGATGGCCAAGCAGAGCGGCATCACCGTGCTGCTGGTCGGCC
ACGTCACCAAAGAGGGCTCGCTGGCCGGCCCGCGCGTGTTGGAGCACATGGTGGATACCGTGCTGTATTTCGAGGGCGAT
TCCCATTCCAGCTACCGGATGATACGCGCGATCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCGATGAC
CGATCGCGGCCTGAAGGGCGTGTCCAACCCGTCGGCCATCTTCCTCTCATCGTACCGGGATGACGTCGCCGGCTCCTGCG
TGCTGGTGACGCAGGAAGGCACGCGGCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGACGATTGCCACGGCTTCCAGCCC
AAGCGCCTCACCGTCGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCACCGCCACGGCGGCGTGGCCTG
CTTCGACCAGGACGTGTTCCTCAACGCGGTGGGCGGCGTCAAGATCAACGAGCCGGCGGCCGACCTGGCCATCATCCTGG
CCATGGTTTCGTCCTTGCGCAACAAGGCGCTGCCGGAGAAGCTGGTGGTGTTCGGCGAGGTGGGCCTTGCCGGCGAAGTG
CGGCCGGTGACGCGCGGCCAGGAGCGTTTGAAGGAAGCCGCCAAGCTGGGCTTCACTCGCGCCATCGTGCCCAGCGCCAA
CAAGCCGCGGCAGGAAATCGAGGGCCTGAAGGTATTGGCCGTGGACCGCCTGGACCAGGCGGTGGAATACTGCAGGGAGT
AG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(358-446)

AAA domain (AAA_25)

(73-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

100

0.503
  radA Streptococcus mitis SK321

48.009

99.779

0.479
  radA Streptococcus mitis NCTC 12261

47.788

99.779

0.477
  radA Streptococcus pneumoniae TIGR4

50

93.598

0.468
  radA Streptococcus pneumoniae D39

50

93.598

0.468
  radA Streptococcus pneumoniae Rx1

50

93.598

0.468
  radA Streptococcus pneumoniae R6

50

93.598

0.468

Multiple sequence alignment