Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   C9I78_RS11380 Genome accession   NZ_CP028141
Coordinates   2304412..2307783 (-) Length   1123 a.a.
NCBI ID   WP_162597327.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain R14     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2299412..2312783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I78_RS11350 (C9I78_11345) - 2300254..2300682 (+) 429 WP_021449627.1 HIT domain-containing protein -
  C9I78_RS11355 (C9I78_11350) - 2300800..2301030 (-) 231 WP_005496063.1 FeoC-like transcriptional regulator -
  C9I78_RS11360 (C9I78_11355) feoB 2301027..2303303 (-) 2277 WP_005486014.1 Fe(2+) transporter permease subunit FeoB -
  C9I78_RS11365 (C9I78_11360) - 2303303..2303530 (-) 228 WP_005455496.1 FeoA family protein -
  C9I78_RS11380 (C9I78_11375) tfoS 2304412..2307783 (-) 3372 WP_162597327.1 AraC family transcriptional regulator Regulator
  C9I78_RS11385 (C9I78_11380) znuA 2307994..2308872 (-) 879 WP_108744999.1 zinc ABC transporter substrate-binding protein ZnuA -
  C9I78_RS11390 (C9I78_11385) znuC 2308951..2309739 (+) 789 WP_025498707.1 zinc ABC transporter ATP-binding protein ZnuC -
  C9I78_RS11395 (C9I78_11390) znuB 2309732..2310517 (+) 786 WP_005455500.1 zinc ABC transporter permease subunit ZnuB -
  C9I78_RS11400 (C9I78_11395) sucD 2310666..2311538 (-) 873 WP_005486020.1 succinate--CoA ligase subunit alpha -
  C9I78_RS11405 (C9I78_11400) sucC 2311538..2312704 (-) 1167 WP_005455468.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1123 a.a.        Molecular weight: 126827.33 Da        Isoelectric Point: 5.6446

>NTDB_id=238449 C9I78_RS11380 WP_162597327.1 2304412..2307783(-) (tfoS) [Vibrio parahaemolyticus strain R14]
MLRQLVLIFWGLFISSHAFALNNANAIFYPLPTQVKGTFIAAKKLFLGEQGGLWIHDVHGRVLFYDGQNVLPKSGSFLQT
TAKQLAYHQGSFWTFVENEVYQTYPNKERQLVFSLNPGSQIRKIGSSGDYIWVSDGAHFYTYNIKTNELDSFSLLQLYQH
SNNSYVYINDAILVETKWALATTSGVYLSEGNKFDHVISSGQNYIEKVYYSHTRREILVGTLKGALIFNIYEPNKEIVKI
GGSHVLTFSETNQEYWVGTEHGLYLYSFLTGEVTEVEPASFLELELDSTKIYSLLSDNMGGMWIATNQGIRYYSLFSKKF
ERVTFSSYDSQTLSGRIRQTVTGPDGVLWFADDRKLYRSGAEGIVKVLELDSQINEFAFQRGMLWLATSKGLEIFQLEGL
KKVSFPYLQVMAGHAVEHIALDDTNRLWVSSGYQLYNVDIDKQSVRNFGSEWIVSQYLPAKVTRLYDTEDKLFIGTDHGI
YEYDDERIRFNRFSEKYGESLDIVTAADGSQWFASSYGLFKTVAGGEAKQVLEMSVANARPACLISDAKGVWLASSVGLS
YYRLSGELVKHYSSASGLINNEFIPGICSVVKRTEDGERELVLGSKYGLVKAEASKLLVSNPPESRFIVSQVMLENDVIQ
VGSSDLDGIKLPYGSSLSFLFGIMPKPDSQNLYYRLNEDDRWQTLEGGQLTLEHLNSGEYHLQVSNESQVTAGVVGLESR
FEVLKPWYLSQLAILGFLVSISTLIGLIMYWRSRYVMQANRELAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKTSVDYISSKLPVERDSITEDHVSKTYWQLNELKSAPGDASNGSQNYNLSQITQSVVDVWRDDFAKAGISVELE
DENKSSRIALESFNLDVIFNSIFANIIKRSFRGQAVKVMLEEGRDIVSLSFLDYGTQLPNKLSLSRPANNNVDLSIDNLS
QLVTVSGGHLAVFTSDAQNKIEITWPMAKELSHVEEVLPEFVPENIVEEKASPENEWLQKVYQLVAEHYHDPDFGTATAA
KMLFMSERSLQRRFKSASSRTLKDYLTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMEQDN
HAN

Nucleotide


Download         Length: 3372 bp        

>NTDB_id=238449 C9I78_RS11380 WP_162597327.1 2304412..2307783(-) (tfoS) [Vibrio parahaemolyticus strain R14]
TTGCTTCGCCAACTTGTCCTGATTTTCTGGGGACTCTTCATATCATCTCACGCATTTGCGCTGAACAACGCAAATGCCAT
CTTTTACCCTTTGCCTACTCAGGTTAAGGGCACTTTTATTGCTGCGAAAAAATTGTTCTTGGGCGAGCAAGGTGGACTAT
GGATTCATGATGTACATGGCCGCGTTCTTTTTTATGACGGCCAGAATGTTCTGCCAAAATCAGGCAGTTTTTTGCAAACG
ACTGCGAAGCAGCTTGCGTATCATCAAGGGTCATTCTGGACCTTTGTCGAAAATGAGGTTTATCAGACCTACCCAAACAA
AGAAAGGCAGTTGGTCTTTAGCCTTAACCCCGGGTCGCAAATTAGAAAAATAGGTTCATCAGGTGATTATATTTGGGTCA
GTGATGGCGCACATTTTTATACCTACAACATCAAAACCAATGAACTTGATTCATTTTCACTGCTTCAACTGTATCAACAT
AGCAATAATAGTTATGTGTACATCAATGATGCGATTCTGGTCGAAACCAAATGGGCGTTGGCTACAACATCTGGTGTCTA
TCTTTCTGAAGGTAATAAATTTGATCACGTGATTTCATCCGGTCAAAACTACATTGAAAAAGTGTACTACTCGCATACGA
GACGCGAGATATTGGTCGGCACCTTAAAAGGCGCGTTGATCTTCAATATTTACGAGCCGAACAAAGAGATCGTCAAAATT
GGCGGCTCCCACGTACTGACGTTTTCAGAGACCAATCAAGAGTATTGGGTTGGTACTGAGCACGGTTTGTATCTCTACTC
GTTTTTAACTGGTGAAGTTACTGAAGTTGAGCCTGCGAGCTTCTTAGAGTTAGAGCTTGATAGCACTAAAATTTATTCCT
TACTTAGCGACAACATGGGCGGAATGTGGATAGCGACCAACCAAGGCATTCGTTATTACTCTTTGTTCAGCAAAAAATTT
GAGCGAGTTACCTTTAGTAGCTATGACTCGCAAACCTTATCTGGTCGCATCAGACAAACGGTAACAGGGCCAGATGGTGT
GCTTTGGTTTGCCGATGACCGCAAACTGTATCGTTCTGGCGCGGAAGGGATTGTAAAAGTCTTAGAATTAGATTCTCAGA
TTAACGAATTCGCATTCCAACGAGGCATGTTATGGCTTGCCACTTCAAAAGGCTTGGAGATATTCCAATTGGAAGGGCTG
AAAAAGGTCAGCTTCCCTTATTTACAAGTGATGGCTGGGCATGCTGTTGAGCATATTGCTCTAGACGACACAAACCGTTT
GTGGGTATCCAGCGGTTACCAACTTTACAACGTTGATATCGACAAGCAATCCGTCAGAAACTTTGGTAGCGAATGGATCG
TGAGTCAGTACTTACCAGCTAAAGTGACGCGCTTATATGATACCGAAGATAAACTTTTTATTGGTACGGATCACGGCATT
TATGAATACGATGATGAACGTATTCGTTTCAATCGTTTCTCGGAAAAATATGGCGAGTCGCTAGATATAGTGACAGCGGC
GGATGGCTCTCAGTGGTTTGCCTCTTCCTATGGGTTGTTTAAAACAGTGGCTGGTGGCGAAGCCAAGCAAGTCTTGGAGA
TGAGTGTTGCGAATGCTCGTCCGGCGTGTTTGATCAGTGATGCGAAAGGTGTGTGGCTCGCATCTTCTGTTGGGTTGAGT
TACTACCGATTGTCCGGTGAGTTAGTTAAACATTATTCATCTGCATCGGGCTTGATTAATAATGAGTTTATTCCTGGGAT
ATGTAGCGTAGTGAAACGCACAGAAGATGGTGAACGTGAACTTGTTTTAGGCTCAAAATATGGATTAGTTAAAGCAGAGG
CTTCAAAACTATTGGTGTCAAACCCGCCAGAATCCCGCTTTATTGTTAGCCAAGTGATGCTTGAAAACGATGTAATCCAA
GTGGGGAGTTCCGACCTTGATGGGATTAAGCTGCCTTATGGTTCTTCGCTGAGTTTTCTCTTTGGCATCATGCCTAAACC
GGATAGCCAGAACCTCTACTACCGCTTAAACGAAGACGACCGATGGCAGACCTTAGAAGGGGGTCAGTTAACCTTAGAGC
ACCTCAACTCTGGGGAATACCACCTTCAAGTGAGTAACGAGTCACAGGTAACGGCGGGCGTTGTTGGCTTAGAGTCTCGT
TTTGAAGTGCTTAAACCATGGTATCTATCCCAGCTTGCGATATTAGGCTTTCTCGTCTCAATTTCTACGCTTATCGGCCT
TATCATGTACTGGCGTTCACGATATGTTATGCAAGCAAACCGAGAGCTTGCTGCTCAGGTCACTCTAAAAACCAACCAGT
TAAGGCATCAAAGCCGCGTATTATTGACGAGTAACCAACAGTTAAGAAAGCAAATTCAGGTTAGAAATCTATTAGTTGAC
CATGTTGCTCAGTCTATAAAAACCAGCGTCGATTATATCTCGTCAAAATTGCCAGTGGAGAGAGATTCCATCACAGAGGA
TCACGTATCAAAAACTTACTGGCAGCTGAATGAGCTTAAAAGTGCTCCAGGTGATGCGAGTAACGGCAGTCAAAACTACA
ACCTAAGCCAAATTACGCAATCTGTGGTGGATGTGTGGCGAGACGATTTCGCCAAAGCGGGGATCTCTGTGGAGTTAGAG
GATGAGAACAAGTCTAGCCGTATTGCTCTAGAGAGTTTTAATCTGGATGTTATCTTCAACAGTATCTTTGCCAACATCAT
CAAGCGCTCTTTCCGAGGTCAAGCTGTAAAAGTGATGCTAGAAGAGGGACGGGACATTGTCTCTCTCAGCTTTTTGGATT
ACGGAACGCAATTGCCAAATAAACTTTCTCTAAGTCGTCCTGCGAATAACAATGTGGACTTGAGTATCGACAATCTTTCG
CAGTTGGTTACGGTGAGTGGAGGGCACTTAGCGGTGTTCACTTCTGATGCGCAGAATAAAATTGAGATTACTTGGCCGAT
GGCCAAAGAGTTGAGCCATGTTGAGGAAGTTTTACCAGAATTTGTGCCAGAAAACATCGTCGAAGAGAAAGCCAGTCCAG
AGAATGAGTGGCTACAAAAGGTTTATCAGTTAGTTGCTGAGCATTACCATGACCCTGATTTTGGTACTGCGACAGCGGCT
AAGATGTTATTTATGTCTGAACGTAGTTTACAACGCCGCTTTAAGTCGGCCTCGTCAAGAACGTTAAAAGATTATTTAAC
GGAGGTACGGTTAGAAACTGCTTGTGAACAGTTACTCGCAGGTGAAAAAATCAGTGAAGTGGCTTTCAACTGCGGTTTCA
ATGATCCTTCTTACTTCAGCCAGAAGTTCAAGTTACACTTTGGTTTACCTCCATCAAAGTTCGCGATGGAACAAGACAAT
CACGCAAATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1040-1114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

38.622

100

0.394

Multiple sequence alignment