Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   TRNA_RS21855 Genome accession   NC_006270
Coordinates   64878..65108 (+) Length   76 a.a.
NCBI ID   WP_003178210.1    Uniprot ID   A0A6I1MI94
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 59878..70108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS21825 (BL00522) ridA 59935..60312 (+) 378 WP_003178196.1 2-iminobutanoate/2-iminopropanoate deaminase -
  TRNA_RS21830 (BL00521) spoVG 60492..60785 (+) 294 WP_011197466.1 septation regulator SpoVG -
  TRNA_RS21835 (BL00520) glmU 61090..62460 (+) 1371 WP_011197467.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  TRNA_RS21840 (BL00519) - 62481..63431 (+) 951 WP_003178203.1 ribose-phosphate diphosphokinase -
  TRNA_RS21845 (BL00518) - 63512..64138 (+) 627 WP_003178205.1 50S ribosomal protein L25/general stress protein Ctc -
  TRNA_RS21850 (BL00517) pth 64255..64821 (+) 567 WP_003178208.1 aminoacyl-tRNA hydrolase -
  TRNA_RS21855 (BL00516) subA/fin 64878..65108 (+) 231 WP_003178210.1 anti-sigma-F factor Fin family protein Machinery gene
  TRNA_RS21860 (BL00515) mfd 65173..68706 (+) 3534 WP_011197468.1 transcription-repair coupling factor -
  TRNA_RS21865 (BL00514) spoVT 68844..69380 (+) 537 WP_003178213.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8950.85 Da        Isoelectric Point: 5.3733

>NTDB_id=23844 TRNA_RS21855 WP_003178210.1 64878..65108(+) (subA/fin) [Bacillus licheniformis DSM 13 = ATCC 14580]
MALHYYCRHCGVKVGSLDHSYVNSEQLGFNHLTNDERNDMISYMDNGDLHVKTICEDCQEALERNPDYHQYHSFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=23844 TRNA_RS21855 WP_003178210.1 64878..65108(+) (subA/fin) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGGCTTTACATTATTATTGCCGGCATTGCGGCGTTAAAGTCGGAAGTCTTGACCATTCTTATGTAAACAGTGAACAGTT
AGGCTTTAACCACTTAACAAATGATGAAAGAAACGATATGATTTCTTATATGGATAATGGGGATTTACACGTGAAGACGA
TATGTGAAGATTGTCAAGAAGCGCTTGAGCGAAACCCGGATTATCACCAATATCATTCATTTATTCAATAG

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MI94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

77.632

100

0.776

Multiple sequence alignment