Detailed information NTG0238422

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: CFN60_RS01960
• Genome accession: NZ_CP022341
• Coordinates: 392298..393446 (+)
• Length: 382 a.a.
• NCBI ID: WP_014304340.1
• Uniprot ID: I2C1C2
• Organism: Bacillus velezensis strain 157
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 387298..398446

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFN60_RS01940 (CFN60_01940)	-	387698..388381 (-)	684	WP_022552585.1	ABC transporter ATP-binding protein	-
CFN60_RS01945 (CFN60_01945)	-	388396..389829 (-)	1434	WP_022552586.1	ABC transporter permease	-
CFN60_RS01950 (CFN60_01950)	-	390042..390725 (+)	684	WP_022552587.1	response regulator transcription factor	-
CFN60_RS01955 (CFN60_01955)	-	390712..392139 (+)	1428	WP_089072406.1	sensor histidine kinase	-
CFN60_RS01960 (CFN60_01960)	rapC	392298..393446 (+)	1149	WP_014304340.1	Rap family tetratricopeptide repeat protein	Regulator
CFN60_RS01965 (CFN60_01965)	phrC	393430..393549 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
CFN60_RS01970 (CFN60_01970)	-	393701..393811 (-)	111	WP_369878517.1	YjcZ family sporulation protein	-
CFN60_RS01975 (CFN60_01975)	-	393891..395255 (-)	1365	WP_021495117.1	aspartate kinase	-
CFN60_RS01980 (CFN60_01980)	ceuB	395669..396622 (+)	954	WP_014416904.1	ABC transporter permease	Machinery gene
CFN60_RS01985 (CFN60_01985)	-	396612..397559 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
CFN60_RS01990 (CFN60_01990)	-	397553..398311 (+)	759	WP_022552588.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45494.75 Da
• Isoelectric Point: 4.9939

>NTDB_id=238422 CFN60_RS01960 WP_014304340.1 392298..393446(+) (rapC) [Bacillus velezensis strain 157]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=238422 CFN60_RS01960 WP_014304340.1 392298..393446(+) (rapC) [Bacillus velezensis strain 157]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAAGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTATGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAAGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

3D structure

• AlphaFold DB: I2C1C2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568