Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CFN77_RS10450 Genome accession   NZ_CP022319
Coordinates   2064232..2064867 (+) Length   211 a.a.
NCBI ID   WP_096881568.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SGAir0031     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2059232..2069867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN77_RS10410 (CFN77_10510) - 2059387..2060505 (+) 1119 WP_234784208.1 NADH-dependent flavin oxidoreductase -
  CFN77_RS10415 (CFN77_10515) - 2060555..2061061 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  CFN77_RS10420 (CFN77_10520) - 2061230..2061649 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  CFN77_RS10425 (CFN77_10525) - 2061671..2062132 (-) 462 WP_096881566.1 YppG family protein -
  CFN77_RS10430 (CFN77_10530) - 2062241..2062621 (-) 381 WP_234710322.1 YppE family protein -
  CFN77_RS10435 (CFN77_10535) - 2062671..2062904 (-) 234 WP_224558417.1 DUF5446 family protein -
  CFN77_RS10440 (CFN77_10540) sspM 2063101..2063205 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  CFN77_RS10445 (CFN77_10545) - 2063229..2064185 (-) 957 WP_096881567.1 DUF2515 domain-containing protein -
  CFN77_RS10450 (CFN77_10550) recU 2064232..2064867 (+) 636 WP_096881568.1 Holliday junction resolvase RecU Machinery gene
  CFN77_RS10455 (CFN77_10555) - 2064887..2067559 (+) 2673 WP_035702944.1 PBP1A family penicillin-binding protein -
  CFN77_RS10460 (CFN77_10560) - 2067595..2068104 (-) 510 WP_096881569.1 YpoC family protein -
  CFN77_RS10465 (CFN77_10565) nth 2068101..2068763 (-) 663 WP_008344602.1 endonuclease III -
  CFN77_RS10470 (CFN77_10570) - 2068781..2069485 (-) 705 WP_096881570.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24323.61 Da        Isoelectric Point: 9.6582

>NTDB_id=238314 CFN77_RS10450 WP_096881568.1 2064232..2064867(+) (recU) [Bacillus altitudinis strain SGAir0031]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKHHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=238314 CFN77_RS10450 WP_096881568.1 2064232..2064867(+) (recU) [Bacillus altitudinis strain SGAir0031]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTGTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCATCATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment