Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CFN77_RS01960 Genome accession   NZ_CP022319
Coordinates   369602..370030 (-) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain SGAir0031     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 364602..375030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN77_RS01930 (CFN77_01945) - 364747..365076 (+) 330 WP_024718960.1 YckD family protein -
  CFN77_RS01935 (CFN77_01950) - 365123..365887 (-) 765 WP_096880981.1 MBL fold metallo-hydrolase -
  CFN77_RS01940 (CFN77_01955) - 366003..366422 (+) 420 WP_024718958.1 Lrp/AsnC family transcriptional regulator -
  CFN77_RS01945 (CFN77_01960) - 366447..367253 (+) 807 WP_024718957.1 aminoglycoside N(3)-acetyltransferase -
  CFN77_RS01950 (CFN77_01965) comJ 367255..367641 (-) 387 WP_096880982.1 competence protein ComJ -
  CFN77_RS01955 (CFN77_01970) - 367778..369475 (-) 1698 WP_096880983.1 methyl-accepting chemotaxis protein -
  CFN77_RS01960 (CFN77_01975) nucA/comI 369602..370030 (-) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CFN77_RS01965 (CFN77_01980) - 370399..372468 (+) 2070 WP_041508230.1 hydantoinase/oxoprolinase family protein -
  CFN77_RS01970 (CFN77_01985) - 372458..374443 (+) 1986 WP_047945876.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=238287 CFN77_RS01960 WP_007498233.1 369602..370030(-) (nucA/comI) [Bacillus altitudinis strain SGAir0031]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=238287 CFN77_RS01960 WP_007498233.1 369602..370030(-) (nucA/comI) [Bacillus altitudinis strain SGAir0031]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCAAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGTGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514

Multiple sequence alignment