Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CFN77_RS00595 Genome accession   NZ_CP022319
Coordinates   109224..110603 (+) Length   459 a.a.
NCBI ID   WP_096880893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SGAir0031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 104224..115603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN77_RS00575 (CFN77_00575) - 104566..105030 (+) 465 WP_003217184.1 CtsR family transcriptional regulator -
  CFN77_RS00580 (CFN77_00580) - 105045..105602 (+) 558 WP_007496258.1 UvrB/UvrC motif-containing protein -
  CFN77_RS00585 (CFN77_00585) - 105607..106698 (+) 1092 WP_008345444.1 protein arginine kinase -
  CFN77_RS00590 (CFN77_00590) clpC 106695..109130 (+) 2436 WP_096880892.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  CFN77_RS00595 (CFN77_00595) radA 109224..110603 (+) 1380 WP_096880893.1 DNA repair protein RadA Machinery gene
  CFN77_RS00600 (CFN77_00600) disA 110606..111685 (+) 1080 WP_007496267.1 DNA integrity scanning diadenylate cyclase DisA -
  CFN77_RS00605 (CFN77_00605) - 111839..112939 (+) 1101 WP_047946821.1 PIN/TRAM domain-containing protein -
  CFN77_RS00610 (CFN77_00610) ispD 112953..113642 (+) 690 WP_008345432.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CFN77_RS00615 (CFN77_00615) ispF 113646..114122 (+) 477 WP_007496273.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49967.36 Da        Isoelectric Point: 7.1218

>NTDB_id=238286 CFN77_RS00595 WP_096880893.1 109224..110603(+) (radA) [Bacillus altitudinis strain SGAir0031]
MAKSKSKFICQSCGYESAKWMGKCPGCGTWNSMTEEVVRKEPANRRSAFNHSVQTIQKPSPISAIETSEEPRIKTNLEEF
NRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDQNQNVLYISGEESIKQTKLRADRLGIESASLHVLAETDMEYIT
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNELGIFEMREEGLTEVLNPSEIFLEERSAGVSGSCVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAAPHQADCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMFIPQANIDGWKKPRGIELAGVENVAEALRISLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=238286 CFN77_RS00595 WP_096880893.1 109224..110603(+) (radA) [Bacillus altitudinis strain SGAir0031]
ATGGCTAAGTCAAAATCAAAATTTATATGCCAATCGTGCGGTTATGAGTCAGCCAAATGGATGGGGAAATGTCCCGGCTG
CGGCACTTGGAACAGTATGACAGAAGAGGTCGTTCGTAAAGAGCCGGCAAATCGTCGAAGTGCGTTTAATCATTCTGTTC
AAACCATTCAAAAACCTTCACCTATATCTGCAATTGAAACATCCGAAGAACCCCGAATTAAAACGAATTTAGAAGAATTT
AACCGAGTATTAGGAAGTGGAATTGTCAAAGGTTCACTCGTTCTTATTGGCGGTGATCCTGGGATTGGGAAGTCCACACT
ATTATTACAAGTTTCAGCACAGCTATCAGATCAAAATCAGAATGTGTTATACATATCTGGTGAGGAATCAATCAAACAAA
CGAAGCTTAGGGCGGACCGTCTCGGTATTGAAAGTGCCTCTTTACATGTTTTGGCTGAAACCGATATGGAGTATATAACG
TCTGCTATACAAGAGATGAAACCCGCTTTTGTTGTGGTTGATTCAATTCAAACCGTTTATCAAAGCGATATCACGTCAGC
TCCTGGATCTGTTTCTCAGGTGAGGGAATGCACTGCCCAGCTGATGAAAATTGCCAAGACGAATGGTATTCCTATTTTTA
TCGTTGGTCACGTGACGAAGGAGGGCTCGATTGCTGGGCCGCGCCTTTTAGAGCATATGGTAGATACAGTTCTTTATTTT
GAAGGGGAGCGTCATCATACGTTTCGTATTTTAAGGGCAGTGAAAAACCGTTTTGGTTCAACGAATGAATTAGGAATTTT
TGAAATGAGAGAGGAAGGGCTCACAGAGGTATTAAACCCATCAGAAATCTTCTTAGAAGAGCGGTCAGCAGGTGTATCTG
GATCGTGTGTTGTTGCCTCAATGGAAGGAACAAGACCTGTTCTAGTGGAGATACAAGCACTTATTTCACCGACGAGCTTT
GGGAATCCACGGAGAATGGCTACTGGCCTTGATCATAACCGAGTGTCATTGCTTATGGCCGTTTTAGAAAAACGGGTAGG
GCTGCTACTGCAAAACCAAGATGCCTACTTAAAGGTCGCAGGTGGTGTGAAACTTGATGAACCAGCGATTGACTTGGCTA
TTGCCGTCAGTATTGCATCAAGCTTTAAAGATGCAGCGCCGCATCAAGCAGATTGCTTTATAGGAGAAGTGGGTCTGACG
GGAGAAGTCAGAAGAGTATCAAGAATTGAACAGCGTGTGCAGGAAGCTGCTAAACTAGGATTTAAACGAATGTTTATTCC
TCAGGCGAATATAGATGGATGGAAAAAACCGAGAGGGATTGAGTTAGCCGGTGTAGAAAATGTAGCAGAGGCACTTCGTA
TTTCACTAGGGGGATCATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

87.118

99.782

0.869
  radA Streptococcus mitis NCTC 12261

61.81

98.693

0.61
  radA Streptococcus pneumoniae Rx1

61.81

98.693

0.61
  radA Streptococcus pneumoniae D39

61.81

98.693

0.61
  radA Streptococcus pneumoniae R6

61.81

98.693

0.61
  radA Streptococcus pneumoniae TIGR4

61.81

98.693

0.61
  radA Streptococcus mitis SK321

61.81

98.693

0.61

Multiple sequence alignment