Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CFK37_RS00525 Genome accession   NZ_CP022315
Coordinates   99904..101718 (-) Length   604 a.a.
NCBI ID   WP_089060073.1    Uniprot ID   A0A220TYK8
Organism   Virgibacillus phasianinus strain LM2416     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 94904..106718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK37_RS00500 (CFK37_00500) - 95208..96011 (-) 804 WP_089060068.1 NAD kinase -
  CFK37_RS00505 (CFK37_00505) - 96065..96673 (-) 609 WP_089060069.1 GTP pyrophosphokinase family protein -
  CFK37_RS00510 (CFK37_00510) - 96888..97463 (+) 576 WP_089060070.1 CYTH domain-containing protein -
  CFK37_RS00515 (CFK37_00515) - 97532..97912 (+) 381 WP_089060071.1 globin -
  CFK37_RS00520 (CFK37_00520) - 97956..98852 (+) 897 WP_089060072.1 ClpXP adapter SpxH family protein -
  CFK37_RS00525 (CFK37_00525) pepF 99904..101718 (-) 1815 WP_089060073.1 oligoendopeptidase F Regulator
  CFK37_RS00530 (CFK37_00530) - 101905..103080 (-) 1176 WP_089060074.1 competence protein CoiA family protein -
  CFK37_RS00535 (CFK37_00535) mecA 103241..103921 (-) 681 WP_089060075.1 adaptor protein MecA -
  CFK37_RS00540 (CFK37_00540) spxA 104273..104668 (-) 396 WP_089060076.1 transcriptional regulator SpxA -
  CFK37_RS00545 (CFK37_00545) - 105026..105619 (-) 594 WP_089060077.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69647.99 Da        Isoelectric Point: 4.4729

>NTDB_id=238234 CFK37_RS00525 WP_089060073.1 99904..101718(-) (pepF) [Virgibacillus phasianinus strain LM2416]
MAKGTKELPKRSELPKELTWDLEDIFATDEEWEKELNSLKQDIPKIEEYAGKLADSAQTLYDVLKLQDDLSERLGKLFTY
SHMRNDEDTTNSFYQELNAKAENVLTLASSSMSYIVPEILTIDEAKLKEFQAEKEELALYKQTLDEIARQRAHVLSQKEE
ALLAEASEPMENASQTFGLLNNADLTFPAITNEDGEEVDLTHGRYIGFLESKDRSVREAAFKAMYDTYGSFKNTFSSTLT
GTIKKDNFYAKVRNYDSARHAALDGDNIPEQVYENLVEAVNEKIHLLHRYTALRKKVLELEELHMYDMYTPLVQNVEMKI
PYEKAQEYVVDALQPLGEDYVNTIKEGYQSRWIDVEENKGKRSGAYSSGAYGTNPYVLLNWQDNVNDLFTLAHELGHSLH
SYYTRKSQPFRYGNYSIFVAEVASTCNEALLNEYMLNHLEDEKEKLFLLNHFLEGFRGTVFRQTMFAEFEHDIHKRMQEG
EALTAEKLTEIYYALNKKYFGDEVISDEEIGLEWSRIPHFYYNYYVFQYATGYSAATALANQILTDEDGSAVERYLNFLK
AGSSDFPIEVLKKAGVDMTSKQPILEALDVFEEKLNEMEEMLLK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=238234 CFK37_RS00525 WP_089060073.1 99904..101718(-) (pepF) [Virgibacillus phasianinus strain LM2416]
TTGGCTAAAGGAACAAAGGAATTACCTAAAAGAAGTGAGTTACCAAAGGAATTAACTTGGGATTTAGAAGATATTTTTGC
TACAGATGAGGAATGGGAGAAAGAATTAAATAGTTTAAAGCAGGACATTCCAAAGATTGAGGAATATGCCGGCAAACTGG
CTGATTCGGCACAAACATTATATGATGTATTAAAGCTTCAGGATGACTTATCAGAGCGACTAGGTAAGCTTTTTACATAT
TCCCATATGCGTAATGATGAAGATACAACCAATTCATTTTATCAGGAGCTGAATGCAAAAGCGGAAAATGTATTAACCCT
TGCATCAAGTTCCATGAGTTATATTGTGCCCGAAATCCTAACTATTGACGAAGCTAAGTTGAAGGAATTTCAAGCTGAAA
AAGAAGAATTAGCATTATACAAGCAAACATTGGATGAAATTGCCCGCCAGCGTGCGCACGTGTTAAGCCAAAAAGAAGAA
GCGCTGCTTGCTGAAGCATCGGAACCTATGGAAAATGCTTCCCAAACATTTGGTTTGTTAAACAACGCCGATCTGACTTT
CCCGGCAATTACCAACGAGGACGGAGAAGAGGTAGACTTAACACACGGGCGTTATATTGGTTTTTTGGAATCAAAAGACC
GCAGTGTTCGCGAAGCTGCTTTTAAAGCAATGTATGATACGTATGGCAGCTTTAAAAATACGTTCTCATCTACTTTAACC
GGAACAATCAAAAAAGATAACTTCTATGCGAAGGTGCGGAACTATGATTCAGCTAGACACGCTGCACTTGATGGAGACAA
TATTCCGGAGCAAGTTTACGAAAATTTAGTAGAAGCGGTAAATGAAAAGATCCACCTATTGCATCGTTATACAGCATTAC
GTAAAAAAGTTCTTGAATTGGAAGAACTGCATATGTATGACATGTACACACCGCTTGTTCAGAATGTAGAGATGAAAATC
CCATATGAAAAAGCTCAGGAATATGTGGTTGATGCACTGCAGCCGCTTGGTGAAGATTACGTTAACACGATCAAAGAAGG
ATACCAAAGCAGGTGGATTGATGTTGAAGAGAATAAAGGCAAGCGCAGTGGCGCCTACTCATCAGGAGCGTATGGAACCA
ATCCATATGTGCTGCTGAACTGGCAGGATAATGTCAATGATTTGTTTACACTCGCACATGAACTTGGTCATTCCCTGCAC
AGCTATTACACAAGAAAGTCACAGCCATTCCGTTATGGAAATTATTCCATTTTCGTGGCTGAAGTGGCGTCAACCTGTAA
TGAGGCACTATTGAACGAATATATGCTGAACCATTTAGAAGATGAGAAAGAGAAGCTATTCTTATTGAATCATTTTCTTG
AAGGCTTCCGTGGTACTGTTTTCCGTCAGACCATGTTCGCTGAGTTTGAACATGATATTCACAAGCGGATGCAGGAAGGT
GAAGCATTAACTGCAGAAAAACTTACTGAGATTTATTATGCATTAAATAAAAAGTATTTTGGTGATGAAGTTATATCCGA
TGAGGAGATTGGACTCGAATGGTCCCGTATCCCGCATTTTTACTACAATTATTATGTGTTCCAATATGCAACCGGATATT
CCGCCGCAACTGCTTTGGCCAACCAAATCCTAACCGATGAAGATGGCTCAGCAGTTGAGCGCTATTTAAACTTTTTAAAA
GCCGGAAGCAGTGATTTCCCAATTGAAGTGCTGAAAAAGGCTGGAGTTGACATGACTTCAAAACAGCCGATCCTTGAAGC
ACTGGATGTTTTTGAAGAAAAGTTAAATGAAATGGAAGAAATGTTGTTGAAGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-187)

Peptidase family M3 (Peptidase_M3)

(209-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220TYK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.497

98.675

0.488

Multiple sequence alignment