Detailed information NTG0238198

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: CFH90_RS09635
• Genome accession: NZ_CP022298
• Coordinates: 1951508..1952128 (-)
• Length: 206 a.a.
• NCBI ID: WP_126036795.1
• Uniprot ID: A0A3Q8XEY6
• Organism: Acinetobacter johnsonii strain IC001
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1946508..1957128

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFH90_RS09605 (CFH90_09575)	-	1946874..1947305 (-)	432	WP_004696860.1	SRPBCC family protein	-
CFH90_RS09610 (CFH90_09580)	tadA	1947381..1947881 (-)	501	WP_005401161.1	tRNA adenosine(34) deaminase TadA	-
CFH90_RS09615 (CFH90_09585)	-	1947887..1949008 (-)	1122	WP_058951874.1	enoyl-CoA hydratase/isomerase family protein	-
CFH90_RS09620 (CFH90_09590)	ung	1949005..1949718 (-)	714	WP_004696856.1	uracil-DNA glycosylase	-
CFH90_RS09625 (CFH90_09595)	-	1949760..1950356 (-)	597	WP_126036791.1	6-pyruvoyl trahydropterin synthase family protein	-
CFH90_RS09630 (CFH90_09600)	gspK	1950479..1951429 (-)	951	WP_126036793.1	type II secretion system minor pseudopilin GspK	-
CFH90_RS09635 (CFH90_09605)	xcpW	1951508..1952128 (-)	621	WP_126036795.1	type II secretion system minor pseudopilin GspJ	Machinery gene
CFH90_RS09640 (CFH90_09610)	xcpV	1952125..1952616 (-)	492	WP_171457121.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
CFH90_RS09645 (CFH90_09615)	-	1952606..1953175 (-)	570	WP_078388685.1	type II secretion system protein	-
CFH90_RS09650 (CFH90_09620)	-	1953188..1953802 (-)	615	WP_114836892.1	TetR/AcrR family transcriptional regulator	-
CFH90_RS09655 (CFH90_09625)	-	1953848..1954621 (-)	774	WP_126036799.1	TatD family hydrolase	-
CFH90_RS09660 (CFH90_09630)	-	1954648..1954989 (-)	342	WP_058869739.1	PilZ domain-containing protein	-
CFH90_RS09665 (CFH90_09635)	-	1955004..1955987 (-)	984	WP_126036800.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
CFH90_RS09670 (CFH90_09640)	kdsB	1956007..1956768 (-)	762	WP_126036802.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 206 a.a.
• Molecular weight: 23551.16 Da
• Isoelectric Point: 5.3488

>NTDB_id=238198 CFH90_RS09635 WP_126036795.1 1951508..1952128(-) (xcpW) [Acinetobacter johnsonii strain IC001]
MKKCSGFTLVELLVAIAIFAVLSALGWKVFDYLIKIKERNTQHEQRLGQLQEAYQQVLRDTVQIVPITANVAGQIQPAVM
LQNGQLTFSKTGVTDPLMQGIPPEERVEYIYKADEKKLYRYKYKNLNQTGNDQPETSVLLDSVDQFQIMLLNPNEMAQWP
EVALSENDVTQAKILPRGLKINLTVNEVSYEWVFSLLNTDFLKQKN

Nucleotide

• Length: 621 bp

>NTDB_id=238198 CFH90_RS09635 WP_126036795.1 1951508..1952128(-) (xcpW) [Acinetobacter johnsonii strain IC001]
ATGAAAAAATGCTCAGGCTTTACTTTGGTCGAGTTATTGGTGGCAATCGCGATTTTTGCTGTGCTTTCAGCTTTGGGTTG
GAAGGTTTTTGATTATCTGATCAAGATTAAAGAGCGTAATACCCAACATGAACAGCGCTTAGGTCAGCTACAAGAAGCAT
ATCAACAAGTGTTACGTGACACGGTGCAAATTGTACCAATTACTGCCAATGTTGCGGGGCAGATTCAACCCGCAGTCATG
TTGCAAAATGGTCAGTTGACCTTTAGTAAAACTGGCGTGACTGATCCTTTAATGCAAGGCATACCGCCTGAAGAGCGAGT
TGAATATATTTATAAAGCAGATGAAAAAAAACTGTACCGTTATAAATATAAAAATTTAAATCAAACCGGTAATGATCAAC
CTGAAACCAGTGTTTTACTTGATTCAGTTGATCAATTTCAAATTATGTTACTCAACCCCAATGAAATGGCACAATGGCCT
GAGGTGGCATTGAGTGAAAATGATGTGACTCAGGCAAAAATACTACCGCGCGGTTTAAAAATAAACCTCACTGTCAATGA
AGTGAGTTATGAATGGGTATTTAGTTTATTAAATACAGACTTTTTAAAACAAAAAAATTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

• Type II secretion system (T2SS), protein J (T2SSJ) (59-188)

3D structure

• AlphaFold DB: A0A3Q8XEY6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	58.209	97.573	0.568