Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   CFH90_RS09640 Genome accession   NZ_CP022298
Coordinates   1952125..1952616 (-) Length   163 a.a.
NCBI ID   WP_171457121.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain IC001     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1947125..1957616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFH90_RS09610 (CFH90_09580) tadA 1947381..1947881 (-) 501 WP_005401161.1 tRNA adenosine(34) deaminase TadA -
  CFH90_RS09615 (CFH90_09585) - 1947887..1949008 (-) 1122 WP_058951874.1 enoyl-CoA hydratase/isomerase family protein -
  CFH90_RS09620 (CFH90_09590) ung 1949005..1949718 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  CFH90_RS09625 (CFH90_09595) - 1949760..1950356 (-) 597 WP_126036791.1 6-pyruvoyl trahydropterin synthase family protein -
  CFH90_RS09630 (CFH90_09600) gspK 1950479..1951429 (-) 951 WP_126036793.1 type II secretion system minor pseudopilin GspK -
  CFH90_RS09635 (CFH90_09605) xcpW 1951508..1952128 (-) 621 WP_126036795.1 type II secretion system minor pseudopilin GspJ Machinery gene
  CFH90_RS09640 (CFH90_09610) xcpV 1952125..1952616 (-) 492 WP_171457121.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CFH90_RS09645 (CFH90_09615) - 1952606..1953175 (-) 570 WP_078388685.1 type II secretion system protein -
  CFH90_RS09650 (CFH90_09620) - 1953188..1953802 (-) 615 WP_114836892.1 TetR/AcrR family transcriptional regulator -
  CFH90_RS09655 (CFH90_09625) - 1953848..1954621 (-) 774 WP_126036799.1 TatD family hydrolase -
  CFH90_RS09660 (CFH90_09630) - 1954648..1954989 (-) 342 WP_058869739.1 PilZ domain-containing protein -
  CFH90_RS09665 (CFH90_09635) - 1955004..1955987 (-) 984 WP_126036800.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  CFH90_RS09670 (CFH90_09640) kdsB 1956007..1956768 (-) 762 WP_126036802.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18013.57 Da        Isoelectric Point: 10.0242

>NTDB_id=238199 CFH90_RS09640 WP_171457121.1 1952125..1952616(-) (xcpV) [Acinetobacter johnsonii strain IC001]
MRAKDLKNSLPSCARFTRVHSEHSSSSCARMKCYFINPRSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTAHAILRTK
AQFVALNEISMMEINRDWLQGTASKQITQQGETWQIDKSAQATISTNVQRVNVQVNLVNTETGKVDSGVTSLVFFNHRDG
SQP

Nucleotide


Download         Length: 492 bp        

>NTDB_id=238199 CFH90_RS09640 WP_171457121.1 1952125..1952616(-) (xcpV) [Acinetobacter johnsonii strain IC001]
ATGCGAGCTAAAGATTTAAAGAATAGTCTGCCGTCTTGCGCTCGATTTACCCGTGTCCACTCAGAACATAGTTCATCGTC
TTGCGCTCGGATGAAATGTTATTTCATTAATCCTCGCTCAGGATTTACATTACTGGAAGTGATGGTGGCGCTGGCTATTT
TTGCTACAGCAGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACAGCCCACGCCATCTTGCGTACCAAG
GCACAATTTGTTGCCTTGAATGAAATTTCGATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAAT
CACCCAACAAGGTGAAACTTGGCAAATTGATAAATCAGCGCAGGCAACGATCAGTACTAATGTGCAACGCGTCAATGTAC
AAGTGAACTTGGTGAATACTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGA
AGCCAACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(38-61)

Type II secretion system (T2SS), protein I (T2SSI)

(78-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

74.359

71.779

0.534

Multiple sequence alignment