Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   CFH90_RS02705 Genome accession   NZ_CP022298
Coordinates   533835..534692 (+) Length   285 a.a.
NCBI ID   WP_126035225.1    Uniprot ID   A0A3Q8XC01
Organism   Acinetobacter johnsonii strain IC001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 528835..539692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFH90_RS02675 (CFH90_02660) - 529238..530290 (-) 1053 WP_228256467.1 sensor domain-containing diguanylate cyclase -
  CFH90_RS02685 (CFH90_02665) - 530517..531218 (+) 702 WP_004841207.1 IS1 family transposase -
  CFH90_RS02690 (CFH90_02670) - 531364..531939 (-) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  CFH90_RS02695 (CFH90_02675) - 532030..532740 (-) 711 WP_078426185.1 DUF3108 domain-containing protein -
  CFH90_RS02700 (CFH90_02680) - 532896..533573 (-) 678 WP_004977854.1 hypothetical protein -
  CFH90_RS02705 (CFH90_02685) tonB2 533835..534692 (+) 858 WP_126035225.1 energy transducer TonB Machinery gene
  CFH90_RS02710 (CFH90_02690) - 534984..537176 (+) 2193 WP_126035227.1 TonB-dependent siderophore receptor -
  CFH90_RS02715 (CFH90_02695) - 537347..537757 (-) 411 WP_126035229.1 hypothetical protein -
  CFH90_RS02720 (CFH90_02700) ybeY 537859..538338 (-) 480 WP_126035231.1 rRNA maturation RNase YbeY -
  CFH90_RS02725 (CFH90_02705) - 538396..539472 (-) 1077 WP_004977846.1 PhoH family protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32682.26 Da        Isoelectric Point: 6.8941

>NTDB_id=238188 CFH90_RS02705 WP_126035225.1 533835..534692(+) (tonB2) [Acinetobacter johnsonii strain IC001]
MPLAHDWWKDPIFTATVVLAVFLHLVVLTLQFAMPQENDAAVKEIAVTLRPSDKKIENADFLAQADQQGSGTFRESHRMS
SYMPAPMLEQSTGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKVMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISATYLEKFRQKVEFYGNRYYPEAAKQQQLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=238188 CFH90_RS02705 WP_126035225.1 533835..534692(+) (tonB2) [Acinetobacter johnsonii strain IC001]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACCGTCGTGCTGGCGGTATTTTTGCATCTAGTGGT
TTTGACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCCGTTACTTTGCGTCCTTCAGATA
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAAGGTTCAGGGACCTTTCGTGAGTCACATCGCATGTCG
AGCTACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAACAGCAGCGTGAAACTTTAGAGCAGATTCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAACTGTTAATGACGACTTTGAGTTGGCAAAAACAAGCTGAGGATAACCAGCGCAAAAAAG
TCATGGAAGAAATGAACAGTCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTACAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCCAAGCAAGATATTTCGGCCACCTATCTTGA
AAAGTTCCGTCAGAAAGTGGAATTTTATGGCAACCGTTACTATCCAGAAGCAGCTAAACAGCAGCAGCTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGCATCAGGAGGCATCCGAGCTATTCGCCTGATTGATAGTTCAGGTCATGAGATGCTC
GATGAGGCTGCAAAAGCCTCGGTGCGCAAGGCTGCACCATTTGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGATCCAGCAGAGGCAGAGTTTGAAGTGCGCTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q8XC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.194

97.895

0.726

Multiple sequence alignment