Detailed information NTG0238073

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I3U_RS22770
• Genome accession: NZ_CP028126
• Coordinates: 3872144..3873136 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O26 str. RM10386
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3867144..3878136

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I3U_RS22745 (I3U_22725)	ygbN	3867799..3869163 (+)	1365	WP_000104439.1	GntP family transporter	-
I3U_RS22750 (I3U_22730)	-	3869202..3869438 (-)	237	WP_000562988.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
I3U_RS22755 (I3U_22735)	-	3869449..3870876 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
I3U_RS22760 (I3U_22740)	-	3870876..3871469 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
I3U_RS22765 (I3U_22745)	-	3871616..3872023 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
I3U_RS22770 (I3U_22750)	rpoS	3872144..3873136 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I3U_RS22775 (I3U_22755)	nlpD	3873199..3874293 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
I3U_RS22780 (I3U_22760)	pcm	3874478..3875104 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I3U_RS22785 (I3U_22765)	surE	3875098..3875859 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I3U_RS22790 (I3U_22770)	truD	3875840..3876889 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
I3U_RS22795 (I3U_22775)	ispF	3876886..3877365 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I3U_RS22800 (I3U_22780)	ispD	3877365..3878075 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=238073 I3U_RS22770 WP_000081550.1 3872144..3873136(-) (rpoS) [Escherichia coli O26 str. RM10386]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=238073 I3U_RS22770 WP_000081550.1 3872144..3873136(-) (rpoS) [Escherichia coli O26 str. RM10386]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715