Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   I3W_RS17200 Genome accession   NZ_CP028122
Coordinates   3061619..3062134 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli O43 str. RM10042     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3056619..3067134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3W_RS17175 (I3W_17170) ygaZ 3057018..3057755 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  I3W_RS17180 (I3W_17175) ygaH 3057745..3058080 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  I3W_RS17185 (I3W_17180) emrR 3058171..3058701 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  I3W_RS17190 (I3W_17185) emrA 3058828..3060000 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  I3W_RS17195 (I3W_17190) emrB 3060017..3061555 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  I3W_RS17200 (I3W_17195) luxS 3061619..3062134 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  I3W_RS17205 (I3W_17200) gshA 3062284..3063840 (-) 1557 WP_000611800.1 glutamate--cysteine ligase -
  I3W_RS17210 (I3W_17205) yqaA 3063913..3064341 (-) 429 WP_001287454.1 YqaA family protein -
  I3W_RS17215 (I3W_17210) yqaB 3064338..3064904 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  I3W_RS17245 (I3W_17240) csrA 3066229..3066414 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=237984 I3W_RS17200 WP_001130210.1 3061619..3062134(-) (luxS) [Escherichia coli O43 str. RM10042]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=237984 I3W_RS17200 WP_001130210.1 3061619..3062134(-) (luxS) [Escherichia coli O43 str. RM10042]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment