Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | Aba7804_RS12610 | Genome accession | NZ_CP022283 |
| Coordinates | 2617545..2617925 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836910.1 | Uniprot ID | A0AAQ1AB09 |
| Organism | Acinetobacter baumannii strain 7804 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2612545..2622925
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Aba7804_RS12580 (Aba7804_12560) | tadA | 2612665..2613168 (-) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
| Aba7804_RS12585 (Aba7804_12565) | - | 2613175..2614299 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| Aba7804_RS12590 (Aba7804_12570) | ung | 2614296..2615009 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| Aba7804_RS12595 (Aba7804_12575) | - | 2615060..2615656 (-) | 597 | WP_000908450.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| Aba7804_RS12600 (Aba7804_12580) | gspK | 2615886..2616844 (-) | 959 | Protein_2436 | type II secretion system minor pseudopilin GspK | - |
| Aba7804_RS12605 (Aba7804_12585) | xcpW | 2616844..2617545 (-) | 702 | WP_000594572.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| Aba7804_RS12610 (Aba7804_12590) | xcpV | 2617545..2617925 (-) | 381 | WP_000836910.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| Aba7804_RS12615 (Aba7804_12595) | - | 2617915..2618469 (-) | 555 | WP_000841379.1 | type II secretion system protein | - |
| Aba7804_RS12620 (Aba7804_12600) | - | 2618479..2619087 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| Aba7804_RS12625 (Aba7804_12605) | - | 2619125..2619898 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| Aba7804_RS12630 (Aba7804_12610) | - | 2619916..2620257 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| Aba7804_RS12635 (Aba7804_12615) | - | 2620269..2621249 (-) | 981 | WP_001075418.1 | DNA polymerase III subunit delta' | - |
| Aba7804_RS12640 (Aba7804_12620) | kdsB | 2621261..2622022 (-) | 762 | WP_000680701.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13957.17 Da Isoelectric Point: 9.8004
>NTDB_id=237938 Aba7804_RS12610 WP_000836910.1 2617545..2617925(-) (xcpV) [Acinetobacter baumannii strain 7804]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=237938 Aba7804_RS12610 WP_000836910.1 2617545..2617925(-) (xcpV) [Acinetobacter baumannii strain 7804]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |