Detailed information NTG0237909

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I3O_RS17535
• Genome accession: NZ_CP028117
• Coordinates: 3263693..3264685 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O111 str. RM9322
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3258693..3269685

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I3O_RS17510 (I3O_17510)	ygbN	3259355..3260719 (+)	1365	WP_000104439.1	GntP family transporter	-
I3O_RS17515 (I3O_17515)	-	3260758..3260994 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
I3O_RS17520 (I3O_17520)	-	3261005..3262426 (-)	1422	WP_000863199.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
I3O_RS17525 (I3O_17525)	-	3262426..3263019 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
I3O_RS17530 (I3O_17530)	-	3263166..3263573 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
I3O_RS17535 (I3O_17535)	rpoS	3263693..3264685 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I3O_RS17540 (I3O_17540)	nlpD	3264748..3265842 (-)	1095	WP_306365709.1	murein hydrolase activator NlpD	-
I3O_RS17545 (I3O_17545)	pcm	3266027..3266653 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I3O_RS17550 (I3O_17550)	surE	3266647..3267408 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I3O_RS17555 (I3O_17555)	truD	3267389..3268438 (-)	1050	WP_000568972.1	tRNA pseudouridine(13) synthase TruD	-
I3O_RS17560 (I3O_17560)	ispF	3268435..3268914 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I3O_RS17565 (I3O_17565)	ispD	3268914..3269624 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=237909 I3O_RS17535 WP_000081550.1 3263693..3264685(-) (rpoS) [Escherichia coli O111 str. RM9322]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=237909 I3O_RS17535 WP_000081550.1 3263693..3264685(-) (rpoS) [Escherichia coli O111 str. RM9322]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTTGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TATTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715