Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CEY12_RS11155 Genome accession   NZ_CP022282
Coordinates   2472995..2474344 (+) Length   449 a.a.
NCBI ID   WP_089027768.1    Uniprot ID   -
Organism   Chryseobacterium sp. T16E-39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2467995..2479344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEY12_RS11135 (CEY12_11135) yidC 2468175..2469974 (-) 1800 WP_089027764.1 membrane protein insertase YidC -
  CEY12_RS11140 (CEY12_11140) - 2470167..2471774 (-) 1608 WP_089027765.1 CTP synthase -
  CEY12_RS11145 (CEY12_11145) - 2471901..2472467 (-) 567 WP_089027766.1 YceI family protein -
  CEY12_RS11150 (CEY12_11150) - 2472530..2472934 (-) 405 WP_089027767.1 hypothetical protein -
  CEY12_RS11155 (CEY12_11155) radA 2472995..2474344 (+) 1350 WP_089027768.1 DNA repair protein RadA Machinery gene
  CEY12_RS11160 (CEY12_11160) - 2474360..2475469 (+) 1110 WP_089027769.1 helix-turn-helix domain-containing protein -
  CEY12_RS11165 (CEY12_11165) - 2475605..2477149 (+) 1545 WP_089027770.1 zinc-dependent metalloprotease -
  CEY12_RS11170 (CEY12_11170) - 2477230..2477823 (+) 594 WP_089027771.1 ACP phosphodiesterase -
  CEY12_RS11175 (CEY12_11175) - 2478834..2479334 (-) 501 WP_089027772.1 DUF6702 family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49841.37 Da        Isoelectric Point: 6.5079

>NTDB_id=237900 CEY12_RS11155 WP_089027768.1 2472995..2474344(+) (radA) [Chryseobacterium sp. T16E-39]
MAKLRTAYFCQNCGTQYSQWMGQCKNCGQWNTLVEEIVEKPTHKSLPSSKSKQHVINIVEVEAIEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKTVFYVSGEESASQIKMRADRLSEIQNPNCFLFTETSLEKILHEAKKL
EPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRAGFQLGSKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPV
AQVEQRISEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERIF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=237900 CEY12_RS11155 WP_089027768.1 2472995..2474344(+) (radA) [Chryseobacterium sp. T16E-39]
ATGGCAAAACTTAGAACAGCATATTTCTGTCAAAACTGTGGAACCCAGTATTCTCAATGGATGGGACAATGTAAAAATTG
TGGGCAATGGAATACTCTTGTTGAAGAAATTGTAGAAAAACCTACCCATAAAAGTCTTCCTTCCTCAAAAAGCAAACAAC
ATGTCATCAATATTGTGGAGGTGGAAGCAATTGAGGAACCCCGAATAAAAACTCCTTCAGAAGAACTTAACCGAGTTTTG
GGAGGCGGGATCGTTTTGGGCTCCGTTACTTTAATTGGCGGTGAACCCGGAATTGGAAAATCGACGCTGCTCTTGCAGTT
GGCTTTAAAAATGAAAAAAACGGTTTTCTATGTTTCAGGAGAAGAGAGTGCTTCACAAATTAAAATGAGAGCAGACCGTT
TATCTGAGATTCAAAATCCAAATTGTTTTCTTTTCACTGAAACTTCGTTAGAAAAAATCCTTCATGAAGCTAAGAAATTA
GAACCTGATTTTGTCATCATTGACTCTATTCAAACCCTGCAATCTCAACTGATTGAAAGTTCACCGGGAACTGTTTCTCA
AATCAGAGAGTGCTCTAATGAGATCATCAAATATGCTAAGGAAAATAACACACCTGTATTCCTGGTAGGGCACATTACAA
AAGACGGACAAATTGCAGGACCAAAAGTATTGGAACATATGGTTGATGTGGTTCTTAACTTTGACGGAGATAGAAATCAT
CTTTTCAGGTTATTAAGAGCAAATAAAAACCGTTTTGGCTCGACTTCAGAAATCGGCATATACGAAATGATCTCTCAGGG
TCTTAAAGAGATTAAAAACCCATCCGAAATTTTAATTACAAAAAAATTTGAGGAACTTTCGGGAAATTCTGTTGCTGTAA
CTCTGGAAGGAAACCGCCCTATGCTTCTTGAAATCCAGGCACTGGTAAGTACCGCTGTTTATGGAACACCACAAAGAAGC
TCTACCGGCTTTGATGCAAAAAGATTAAACATGCTTCTTGCCGTGTTAGAGAAACGCGCAGGCTTCCAATTGGGCTCAAA
AGATGTTTTTCTTAATATTACAGGAGGGATAAAAACAGACGATCCGGCTCTAGATTTGGCAGTGGTAGCATCTATTCTTT
CTTCCAATGAGGACATCGCCATCTCAGAACATTTTTGCTTTGCTGGTGAAATCGGATTAAGCGGAGAGATCAGACCTGTA
GCTCAGGTGGAACAACGAATTTCGGAGGCCGAAAAATTAGGTTATGAAAAAATATTTGTTTCGAATCTGAATAAAATTCC
AAAAAGAAAATTCGGGATCAAAATTGAGGAAGTAAGTAAAATCGAGGACTTTCACGAACGAATTTTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)

AAA domain (AAA_25)

(66-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.69

100

0.497
  radA Streptococcus mitis NCTC 12261

48.69

100

0.497
  radA Streptococcus pneumoniae Rx1

48.69

100

0.497
  radA Streptococcus pneumoniae R6

48.69

100

0.497
  radA Streptococcus pneumoniae TIGR4

48.69

100

0.497
  radA Bacillus subtilis subsp. subtilis str. 168

49.115

100

0.494
  radA Streptococcus mitis SK321

48.465

100

0.492

Multiple sequence alignment