Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CFI09_RS16520 Genome accession   NZ_CP022279
Coordinates   3075391..3076020 (-) Length   209 a.a.
NCBI ID   WP_033552422.1    Uniprot ID   -
Organism   Escherichia coli strain STEC299     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3070391..3081020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFI09_RS16505 (CFI09_16430) helD 3070633..3072687 (-) 2055 WP_001313718.1 DNA helicase IV -
  CFI09_RS16510 (CFI09_16435) yccF 3072810..3073256 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CFI09_RS16515 (CFI09_16440) yccS 3073266..3075428 (+) 2163 WP_158639731.1 YccS family putative transporter -
  CFI09_RS16520 (CFI09_16445) sxy/tfoX 3075391..3076020 (-) 630 WP_033552422.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CFI09_RS16525 (CFI09_16450) sulA 3076239..3076748 (+) 510 WP_033552421.1 SOS-induced cell division inhibitor SulA -
  CFI09_RS16535 (CFI09_16460) ompA 3077104..3078144 (+) 1041 WP_001441917.1 porin OmpA -
  CFI09_RS16540 (CFI09_16465) matP 3078222..3078674 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  CFI09_RS16545 (CFI09_16470) ycbZ 3078860..3080620 (+) 1761 WP_001552710.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24057.96 Da        Isoelectric Point: 9.4081

>NTDB_id=237884 CFI09_RS16520 WP_033552422.1 3075391..3076020(-) (sxy/tfoX) [Escherichia coli strain STEC299]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACAQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=237884 CFI09_RS16520 WP_033552422.1 3075391..3076020(-) (sxy/tfoX) [Escherichia coli strain STEC299]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
CGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment