Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I3O_RS05430 Genome accession   NZ_CP028117
Coordinates   1083686..1084270 (+) Length   194 a.a.
NCBI ID   WP_077825616.1    Uniprot ID   -
Organism   Escherichia coli O111 str. RM9322     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1078686..1089270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3O_RS05405 (I3O_05395) ycbZ 1079042..1080802 (-) 1761 WP_000156528.1 Lon protease family protein -
  I3O_RS05410 (I3O_05400) matP 1080988..1081440 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  I3O_RS05415 (I3O_05405) ompA 1081516..1082556 (-) 1041 WP_000750416.1 porin OmpA -
  I3O_RS05425 (I3O_05415) sulA 1082913..1083422 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  I3O_RS05430 (I3O_05420) sxy/tfoX 1083686..1084270 (+) 585 WP_077825616.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I3O_RS05435 (I3O_05425) yccS 1084233..1086395 (-) 2163 WP_000875023.1 YccS family putative transporter -
  I3O_RS05440 (I3O_05430) yccF 1086405..1086851 (-) 447 WP_001261235.1 YccF domain-containing protein -
  I3O_RS05445 (I3O_05435) helD 1086974..1089028 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22258.82 Da        Isoelectric Point: 8.4565

>NTDB_id=237882 I3O_RS05430 WP_077825616.1 1083686..1084270(+) (sxy/tfoX) [Escherichia coli O111 str. RM9322]
MATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKL
VRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAI
IGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=237882 I3O_RS05430 WP_077825616.1 1083686..1084270(+) (sxy/tfoX) [Escherichia coli O111 str. RM9322]
CTGGCAACGTTGGGCACAATTGAATACCGATCATTGTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGAT
GGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTGAGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGA
CATATAAAAAGTGTGGCCGATCCGTTACCCTCAATTACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTG
GTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCTGAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTT
GCCCAATATGTCTTTTCATCTGGAAGCGATTCTCGGGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGG
CAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAACAGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATT
ATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACGCCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACA
GGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(101-179)

TfoX N-terminal domain (TfoX_N)

(2-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.485

100

0.995