Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   BG910_RS11815 Genome accession   NZ_CP022278
Coordinates   2447823..2449574 (-) Length   583 a.a.
NCBI ID   WP_089037267.1    Uniprot ID   A0A220S573
Organism   Neisseria chenwenguii strain 10023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2442823..2454574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG910_RS11790 (BG910_11780) ftnA 2442892..2443383 (+) 492 WP_089037013.1 non-heme ferritin -
  BG910_RS11795 (BG910_11785) - 2443500..2444609 (-) 1110 WP_089037014.1 pseudouridine synthase -
  BG910_RS11800 (BG910_11790) pdxH 2444916..2445548 (-) 633 WP_089037015.1 pyridoxamine 5'-phosphate oxidase -
  BG910_RS11805 (BG910_11795) dut 2445665..2446117 (+) 453 WP_089037266.1 dUTP diphosphatase -
  BG910_RS11810 (BG910_11800) - 2446263..2447453 (-) 1191 WP_089037016.1 hypothetical protein -
  BG910_RS11815 (BG910_11805) recD 2447823..2449574 (-) 1752 WP_089037267.1 exodeoxyribonuclease V subunit alpha Machinery gene
  BG910_RS11820 (BG910_11810) - 2449698..2450363 (-) 666 WP_089037017.1 YecA family protein -
  BG910_RS11825 (BG910_11815) - 2450398..2451186 (-) 789 WP_089037018.1 RNA methyltransferase -
  BG910_RS11830 (BG910_11820) - 2451614..2452132 (+) 519 WP_089037019.1 hypothetical protein -
  BG910_RS11835 (BG910_11825) - 2452238..2452831 (+) 594 WP_089037020.1 hypothetical protein -
  BG910_RS11840 (BG910_11830) trxB 2452985..2453932 (+) 948 WP_089037021.1 thioredoxin-disulfide reductase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 62911.15 Da        Isoelectric Point: 6.8227

>NTDB_id=237866 BG910_RS11815 WP_089037267.1 2447823..2449574(-) (recD) [Neisseria chenwenguii strain 10023]
MQDPEHFYLSPAAAATRFIENFAPDVAGVASPFVVQLFNALQNGHSFVRISDGDAAALRRCGGLVGGAGSPLVLAGNRLF
LGRLWQLEQDLAAEIKRLAEAPAPEVDWMQTAQNLQNWFADKGSEGQRDAAALALIKPFMLITGGPGTGKTTTVAKLLGL
VCANSAKLPRIALAAPTGKAAAHMARALHQALEKFEMPSETKTHLAALEGKTVHRLLKLRPPQMRPAFDAQNPLPLDMLV
VDEASMLDVSLLLDLLRAVPTGCRLVFLGDPFQLPSVGVGAVLAALARETVLDAETDRRLREYLPEHGFQTAGHPPALAQ
NTAALTVSHRFGADSGIGCLARAVVAGQSEEAWAQFDKFPEHLAVMAGTPKQQAALLYRKHAAYWRAVDAGDVQTAFKHA
ADVVVLAAWRKDAAAFNEAYLNRLMLEKRARADVPWYAGQMLMVTRNDYGLDLFNGDIGLMMPNADSDGLAAYFKVSDGL
KKIPVSRLPPYEPAFAMTVHKSQGSEYGEVWLLPPSGGAPAADTDEDDVLSGLNNALLYTAITRAREKFVFWGGKNEWTA
AVETRKKRQTALADMIGDCFKGN

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=237866 BG910_RS11815 WP_089037267.1 2447823..2449574(-) (recD) [Neisseria chenwenguii strain 10023]
ATGCAAGATCCCGAACATTTTTATCTCAGTCCCGCCGCCGCTGCGACGCGTTTTATCGAAAACTTTGCCCCCGACGTGGC
GGGTGTGGCGTCGCCGTTTGTCGTGCAGCTTTTCAATGCGCTGCAAAACGGGCATTCGTTTGTCCGCATCAGCGATGGCG
ATGCGGCGGCGTTGCGGCGTTGCGGCGGGTTGGTCGGCGGCGCGGGTTCGCCTTTGGTTTTGGCGGGCAACCGTTTGTTT
TTAGGACGGCTTTGGCAGCTCGAGCAGGATTTGGCGGCAGAAATCAAACGGCTGGCCGAAGCGCCTGCGCCGGAAGTGGA
TTGGATGCAGACGGCGCAAAACCTGCAAAACTGGTTTGCAGACAAGGGTAGCGAAGGGCAGCGCGATGCGGCGGCGCTGG
CGTTGATCAAGCCGTTTATGCTGATTACGGGCGGGCCGGGTACAGGCAAGACGACGACGGTGGCGAAACTGCTGGGTTTG
GTGTGCGCCAATTCGGCCAAGCTGCCGCGCATCGCGCTGGCGGCGCCGACGGGCAAGGCGGCGGCGCATATGGCGCGGGC
GCTGCATCAGGCGCTGGAAAAATTCGAGATGCCGTCTGAAACCAAAACGCATCTGGCGGCTCTGGAAGGCAAAACGGTGC
ACCGCCTGCTGAAGCTGCGCCCGCCGCAGATGCGGCCGGCGTTTGATGCGCAAAATCCGCTGCCGCTGGATATGCTGGTG
GTTGATGAGGCGTCGATGCTGGACGTTTCGCTGCTTTTGGATTTGCTGCGCGCGGTGCCGACGGGCTGCCGCCTGGTGTT
TCTCGGCGATCCGTTCCAACTGCCCTCGGTGGGCGTGGGCGCAGTGTTGGCGGCGCTGGCGCGGGAAACGGTGTTGGACG
CCGAAACCGACCGCCGTTTGCGCGAATATCTGCCCGAACACGGTTTTCAGACGGCCGGACATCCGCCCGCGCTGGCGCAA
AATACCGCTGCGCTGACCGTCAGCCACCGTTTCGGCGCCGACAGCGGCATCGGCTGCCTCGCACGCGCGGTGGTGGCGGG
GCAGAGCGAAGAAGCATGGGCGCAGTTCGACAAATTTCCCGAGCATTTGGCGGTGATGGCGGGTACGCCCAAACAGCAGG
CGGCGCTGCTTTACCGCAAACACGCGGCCTATTGGCGGGCGGTGGACGCCGGAGATGTTCAGACGGCCTTCAAACACGCG
GCGGACGTGGTCGTACTCGCGGCGTGGCGCAAAGACGCGGCGGCGTTCAACGAAGCCTATCTCAACCGCCTGATGCTGGA
AAAACGCGCCCGCGCGGATGTGCCGTGGTATGCGGGGCAGATGCTGATGGTGACGCGCAACGATTACGGGCTGGATCTGT
TTAACGGCGACATCGGCCTGATGATGCCCAATGCGGATTCAGACGGCCTCGCGGCGTATTTCAAGGTTTCAGACGGCCTG
AAAAAAATCCCCGTCAGCCGCCTGCCGCCGTATGAACCGGCGTTTGCGATGACGGTGCACAAAAGCCAGGGTTCGGAATA
CGGCGAGGTCTGGCTGCTGCCGCCATCGGGCGGCGCACCGGCGGCGGATACGGACGAAGACGATGTTTTGTCGGGGCTGA
ACAACGCGCTGCTCTATACCGCGATTACCCGCGCGCGGGAGAAATTTGTGTTTTGGGGCGGGAAAAACGAGTGGACGGCG
GCGGTTGAGACGCGCAAAAAGCGGCAGACGGCGCTGGCGGATATGATTGGGGATTGTTTTAAAGGAAATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(124-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(493-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220S573

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

58.131

99.142

0.576

Multiple sequence alignment