Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   BG910_RS10705 Genome accession   NZ_CP022278
Coordinates   2207533..2208186 (-) Length   217 a.a.
NCBI ID   WP_089036827.1    Uniprot ID   A0A220S4L3
Organism   Neisseria chenwenguii strain 10023     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2202533..2213186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG910_RS10665 (BG910_10655) - 2202776..2203174 (-) 399 WP_089036820.1 HIT family protein -
  BG910_RS10675 (BG910_10665) - 2203558..2204223 (+) 666 WP_089036821.1 hypothetical protein -
  BG910_RS10680 (BG910_10670) ribA 2204216..2204812 (+) 597 WP_089036822.1 GTP cyclohydrolase II -
  BG910_RS10685 (BG910_10675) - 2204900..2205355 (-) 456 WP_089036823.1 PilX family type IV pilin -
  BG910_RS10690 (BG910_10680) - 2205366..2205935 (-) 570 WP_089036824.1 PilX N-terminal domain-containing pilus assembly protein -
  BG910_RS10695 (BG910_10685) - 2205914..2206861 (-) 948 WP_089036825.1 PilW family protein -
  BG910_RS10700 (BG910_10690) pilV 2206867..2207508 (-) 642 WP_089036826.1 type IV pilus modification protein PilV -
  BG910_RS10705 (BG910_10695) pilH 2207533..2208186 (-) 654 WP_089036827.1 GspH/FimT family pseudopilin Machinery gene
  BG910_RS10710 (BG910_10700) dnaB 2208414..2209820 (-) 1407 WP_089036828.1 replicative DNA helicase -
  BG910_RS10715 (BG910_10705) - 2209976..2210557 (+) 582 WP_089036829.1 superoxide dismutase -
  BG910_RS10720 (BG910_10710) mnmC 2210736..2212364 (-) 1629 WP_089036830.1 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC -
  BG910_RS10725 (BG910_10715) - 2212447..2213085 (+) 639 WP_089036831.1 phosphoribosylanthranilate isomerase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24035.21 Da        Isoelectric Point: 9.1316

>NTDB_id=237863 BG910_RS10705 WP_089036827.1 2207533..2208186(-) (pilH) [Neisseria chenwenguii strain 10023]
MNIKQQGFTLIELLVTIAIAAIMATIALPNMTEWIASRRAASQAEQVANLLRFARSEAVRLNLPVYVCPAQIKKDGNPDN
ACNTKYSGQGIVAFVDTNNNKIYERSKDTDLRFTAINVHNQPKRLNNFIFTTDFNGNKTSDQQIWQFRPNGTFGHSASMS
DKFTFSDGYVKIVLTDVSAQDDAAKKNRATVVIIDPSGRAEVCAKSDTRKVCGYSES

Nucleotide


Download         Length: 654 bp        

>NTDB_id=237863 BG910_RS10705 WP_089036827.1 2207533..2208186(-) (pilH) [Neisseria chenwenguii strain 10023]
ATGAACATCAAACAACAAGGCTTCACCCTTATCGAGCTGTTGGTGACCATCGCCATCGCCGCCATCATGGCCACCATCGC
GCTGCCCAACATGACCGAATGGATCGCCTCCCGCCGCGCCGCCTCACAGGCCGAGCAGGTCGCCAACCTCCTGCGCTTCG
CCCGCAGCGAAGCCGTCCGCCTCAATCTTCCCGTTTACGTTTGTCCCGCCCAAATTAAAAAAGACGGCAATCCCGACAAT
GCCTGCAATACAAAATATTCAGGACAAGGCATCGTCGCATTTGTCGATACCAACAACAATAAAATATATGAACGCAGTAA
AGATACCGACTTACGCTTTACCGCCATCAATGTCCACAATCAACCCAAACGGCTGAATAACTTCATTTTTACGACTGACT
TTAACGGCAACAAAACAAGCGATCAGCAAATCTGGCAGTTCCGTCCGAATGGCACTTTCGGTCATTCAGCATCAATGAGC
GATAAATTTACCTTTTCAGACGGCTACGTCAAGATCGTCCTGACCGACGTTTCCGCCCAAGATGACGCCGCCAAAAAAAA
CAGAGCCACTGTCGTTATCATCGATCCGAGCGGCCGGGCTGAAGTATGTGCCAAATCAGACACCCGCAAAGTTTGCGGAT
ATTCCGAATCCTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(43-197)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220S4L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

55.76

100

0.558

Multiple sequence alignment