Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BG910_RS01490 Genome accession   NZ_CP022278
Coordinates   303573..304949 (+) Length   458 a.a.
NCBI ID   WP_089035315.1    Uniprot ID   A0A220RZL2
Organism   Neisseria chenwenguii strain 10023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 298573..309949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG910_RS01470 (BG910_01470) - 298707..299255 (-) 549 WP_089035311.1 YqgE/AlgH family protein -
  BG910_RS01475 (BG910_01475) - 299265..299819 (-) 555 WP_089035312.1 CreA family protein -
  BG910_RS01480 (BG910_01480) - 300032..301789 (+) 1758 WP_089035313.1 peptidoglycan DD-metalloendopeptidase family protein -
  BG910_RS01485 (BG910_01485) - 301999..303486 (+) 1488 WP_089035314.1 S41 family peptidase -
  BG910_RS01490 (BG910_01490) radA 303573..304949 (+) 1377 WP_089035315.1 DNA repair protein RadA Machinery gene
  BG910_RS01495 (BG910_01495) serS 305123..306418 (-) 1296 WP_089035316.1 serine--tRNA ligase -
  BG910_RS01500 (BG910_01500) - 306604..306867 (-) 264 WP_089035317.1 hypothetical protein -
  BG910_RS13110 - 307094..307473 (-) 380 Protein_297 hypothetical protein -
  BG910_RS01515 (BG910_01515) - 308115..308372 (-) 258 WP_157693999.1 hypothetical protein -
  BG910_RS01520 (BG910_01520) - 308332..309018 (-) 687 WP_089035321.1 hypothetical protein -
  BG910_RS01525 (BG910_01525) - 309015..309629 (-) 615 WP_089035322.1 hypothetical protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49312.94 Da        Isoelectric Point: 7.3637

>NTDB_id=237834 BG910_RS01490 WP_089035315.1 303573..304949(+) (radA) [Neisseria chenwenguii strain 10023]
MAKAPKTVYQCSECGGTSPKWQGKCPHCGEWNTLQENLTAPEPKNARFQSWAADISKVQALSEVTAVEVPREPTGVGELD
RVLGGGLVAGAVILLGGDPGIGKSTLLLQTVAKMAQSRKVLYVSGEESAQQVALRAQRLELPADGVNLLAEIRMEAVQTA
LKQHEPAVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGITMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTEHGLKGVSNPSAIFLASYRGDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKIMEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNANEFPNLKIFGVSSLQEAVDICRNSE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=237834 BG910_RS01490 WP_089035315.1 303573..304949(+) (radA) [Neisseria chenwenguii strain 10023]
ATGGCCAAAGCCCCGAAAACCGTTTACCAATGCAGCGAATGCGGCGGCACTTCGCCCAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAATGGAACACGCTTCAGGAAAACCTCACCGCGCCCGAGCCGAAAAACGCCCGTTTCCAGTCTTGGGCGGCGG
ATATTTCCAAAGTGCAGGCATTATCCGAAGTGACCGCCGTGGAAGTGCCGCGCGAACCGACCGGCGTGGGCGAACTCGAC
CGCGTGCTGGGCGGCGGGCTGGTGGCGGGTGCGGTGATTCTGCTCGGCGGCGATCCCGGCATCGGCAAATCCACGCTGCT
GCTGCAAACCGTCGCCAAAATGGCGCAAAGCCGCAAGGTTTTGTACGTTTCCGGCGAGGAATCGGCACAACAGGTCGCCC
TGCGCGCACAGCGTTTGGAACTGCCCGCCGACGGAGTGAACCTTTTGGCAGAAATCCGCATGGAAGCCGTTCAGACGGCC
TTGAAGCAGCACGAACCGGCTGTAGTCGTCATCGATTCGATTCAGACCATGTATTCCGACCAAATCACCAGCGCGCCCGG
TTCGGTGTCGCAGGTACGCGAATGTGCCGCGCAACTCACGCGCATGGCCAAACAGATGGGCATCACCATGATTCTGGTCG
GCCATGTCACCAAAGACGGCGCCATCGCCGGCCCGCGCGTGCTCGAGCATATGGTGGACACGGTTTTGTATTTCGAGGGC
GACCAGCATTCCAACTACCGCATGATCCGCGCCATCAAAAACCGTTTCGGTGCGGCCAATGAGCTGGGCGTGTTCGCCAT
GACCGAACACGGCCTGAAAGGTGTTTCCAACCCCTCGGCGATTTTCCTTGCCAGTTATCGCGGCGACGTCCCCGGCTCGT
GCGTCCTCGTCACCCAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATCCAAGCCCTCGTTGACGACGCACACGGCTTCACG
CCCAAACGCCTCACTGTCGGCCTCGAGCAAAACCGCCTCGCCATGCTCTTGGCCGTGTTAAACCGCCACGCCGGCATCGC
CTGTTTCGACCAAGACGTGTTCCTCAACGCCGTCGGCGGCGTAAAAATCATGGAACCTGCCGCCGACCTTGCCGTCATCC
TCGCCATGCTCTCCAGCTTCCGTAACCGCCCGCTGCCTGAAAAAATGGTCGCCTTCGGCGAAATCGGCCTCAGCGGCGAA
GTCCGCCCCGTCGCCCGCGGACAGGAACGCCTGAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTGCCGAAAGC
CAATATGCCGCGCAACGCCAATGAGTTCCCTAACCTGAAAATTTTCGGCGTTTCCAGCTTACAGGAAGCGGTAGACATCT
GCCGCAACAGCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-220)

Subunit ChlI of Mg-chelatase (ChlI)

(365-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220RZL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.451

99.345

0.491
  radA Streptococcus mitis NCTC 12261

47.672

98.472

0.469
  radA Streptococcus pneumoniae Rx1

47.345

98.69

0.467
  radA Streptococcus pneumoniae D39

47.345

98.69

0.467
  radA Streptococcus pneumoniae R6

47.345

98.69

0.467
  radA Streptococcus pneumoniae TIGR4

47.345

98.69

0.467
  radA Streptococcus mitis SK321

47.228

98.472

0.465

Multiple sequence alignment