Detailed information NTG0237828

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I3M_RS21180
• Genome accession: NZ_CP028116
• Coordinates: 3716978..3717970 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O26 str. RM8426
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3711978..3722970

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I3M_RS21155 (I3M_21135)	ygbN	3712633..3713997 (+)	1365	WP_000104439.1	GntP family transporter	-
I3M_RS21160 (I3M_21140)	-	3714036..3714272 (-)	237	WP_000562988.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
I3M_RS21165 (I3M_21145)	-	3714283..3715710 (-)	1428	WP_032341778.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
I3M_RS21170 (I3M_21150)	-	3715710..3716303 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
I3M_RS21175 (I3M_21155)	-	3716450..3716857 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
I3M_RS21180 (I3M_21160)	rpoS	3716978..3717970 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I3M_RS21185 (I3M_21165)	nlpD	3718033..3719127 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
I3M_RS21190 (I3M_21170)	pcm	3719312..3719938 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I3M_RS21195 (I3M_21175)	surE	3719932..3720693 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I3M_RS21200 (I3M_21180)	truD	3720674..3721723 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
I3M_RS21205 (I3M_21185)	ispF	3721720..3722199 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I3M_RS21210 (I3M_21190)	ispD	3722199..3722909 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=237828 I3M_RS21180 WP_000081550.1 3716978..3717970(-) (rpoS) [Escherichia coli O26 str. RM8426]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=237828 I3M_RS21180 WP_000081550.1 3716978..3717970(-) (rpoS) [Escherichia coli O26 str. RM8426]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715