Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   I3M_RS20875 Genome accession   NZ_CP028116
Coordinates   3659968..3660483 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli O26 str. RM8426     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3654968..3665483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3M_RS20850 (I3M_20830) ygaZ 3655367..3656104 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  I3M_RS20855 (I3M_20835) ygaH 3656094..3656429 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  I3M_RS20860 (I3M_20840) emrR 3656520..3657050 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  I3M_RS20865 (I3M_20845) emrA 3657177..3658349 (+) 1173 WP_001448625.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  I3M_RS20870 (I3M_20850) emrB 3658366..3659904 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  I3M_RS20875 (I3M_20855) luxS 3659968..3660483 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  I3M_RS20880 (I3M_20860) gshA 3660633..3662189 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  I3M_RS20885 (I3M_20865) yqaA 3662262..3662690 (-) 429 WP_001287457.1 YqaA family protein -
  I3M_RS20890 (I3M_20870) yqaB 3662687..3663253 (-) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  I3M_RS20920 (I3M_20900) csrA 3664578..3664763 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=237825 I3M_RS20875 WP_001130207.1 3659968..3660483(-) (luxS) [Escherichia coli O26 str. RM8426]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=237825 I3M_RS20875 WP_001130207.1 3659968..3660483(-) (luxS) [Escherichia coli O26 str. RM8426]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731