Detailed information NTG0237747

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I3Q_RS19810
• Genome accession: NZ_CP028112
• Coordinates: 3604916..3605908 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O103 str. RM8385
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3599916..3610908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I3Q_RS19785 (I3Q_19775)	ygbN	3600571..3601935 (+)	1365	WP_000104439.1	GntP family transporter	-
I3Q_RS19790 (I3Q_19780)	-	3601974..3602210 (-)	237	WP_000562988.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
I3Q_RS19795 (I3Q_19785)	-	3602221..3603648 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
I3Q_RS19800 (I3Q_19790)	-	3603648..3604241 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
I3Q_RS19805 (I3Q_19795)	-	3604388..3604795 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
I3Q_RS19810 (I3Q_19800)	rpoS	3604916..3605908 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I3Q_RS19815 (I3Q_19805)	nlpD	3605971..3607065 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
I3Q_RS19820 (I3Q_19810)	pcm	3607250..3607876 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I3Q_RS19825 (I3Q_19815)	surE	3607870..3608631 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I3Q_RS19830 (I3Q_19820)	truD	3608612..3609661 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
I3Q_RS19835 (I3Q_19825)	ispF	3609658..3610137 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I3Q_RS19840 (I3Q_19830)	ispD	3610137..3610847 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=237747 I3Q_RS19810 WP_000081550.1 3604916..3605908(-) (rpoS) [Escherichia coli O103 str. RM8385]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=237747 I3Q_RS19810 WP_000081550.1 3604916..3605908(-) (rpoS) [Escherichia coli O103 str. RM8385]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715